Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00717 ATGAGCTGCAACGGGTGCAGAGTGCTGAGAAAAGGGTGTAGCAAGACGTGCGAACTGCGATCATGCCTGCGCTGGATAGACTCGCCGGAAGCCCAAGCTAACGCCACCTTGTTCCTCGCTAAGTTCTTTGGCCGGACCGACCTCTTGTCCTTCATCTCCACCGTCCCCGATCATGAAAGACCCGCTTTGTTTAAGTCGCTGTTATACGAAGCTTGTGGAAGAACAGTGAATCCTGTGAACGGAGGGACGGGGCTCTTAGCGACCGGGAGATGGAACGTTTGCGAGGCTGCAGTGGAAACGGTTCTCTCCGGTGGGGTTCCCCTTCCAATTCAGGGGCTTACAGCTGCACTTCCGACGCCGTTTTTTGAAGAAACTGCACTCCCACCCAATAACGGCACATGCACTAAGCTCATCGCACCTCGCCTCTTCTATCCATCTTCGCTGTCCGCCGTCAAAGCGAGAGAATATCAACCGTCCGATTTAGGCAATCTCTCTCAAACAAAACTCACAGGGAGTGTCACCGGAAGCTGCAGTCATGGTGGTCGTAAAGATCTGAAGCTGCTGAATTTATTTGTCTGA 579 53.02 MSCNGCRVLRKGCSKTCELRSCLRWIDSPEAQANATLFLAKFFGRTDLLSFISTVPDHERPALFKSLLYEACGRTVNPVNGGTGLLATGRWNVCEAAVETVLSGGVPLPIQGLTAALPTPFFEETALPPNNGTCTKLIAPRLFYPSSLSAVKAREYQPSDLGNLSQTKLTGSVTGSCSHGGRKDLKLLNLFV 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 17618546 17619215 - BLOR09205 Blo18g00717 74021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00717 192 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Blo18g00717 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 163 - -
Blo18g00717 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 163 - -
Blo18g00717 192 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00008 Blo-Chr6:221401 Blo18g00717 Blo-Chr18:17618546 2.34E-52 dispersed
Blo16g01064 Blo-Chr16:39175828 Blo18g00717 Blo-Chr18:17618546 5.86E-39 dispersed
Blo18g00717 Blo-Chr18:17618546 Blo13g00804 Blo-Chr13:30805934 4.81E-09 dispersed
Blo18g00717 Blo-Chr18:17618546 Blo16g00357 Blo-Chr16:10667141 8.30E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13607 PF03195 LOB 9.10E-23 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00717 - - mnt:21383826 212.231