Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00731 ATGGCGGATTCGCCAGTGAGGGAGCGTTTGAATGGTACAATTGCCAATTACCCCCCTCCTTCTCATTCCTTCAAGCTTGAGATTCCTCCCGTTGATTCTTCACAGCAAACACCTCCCACTACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTCCTCTGATATTTGACCCATCTCCCTCCTCCGACGCGAACCTCATTCACATCCCCAGCTACTCAAGATGGTTTTCTTGGAACAACATCCATGACTGCGAACTTCGCTTCCTTCCCGAGTTTTTTGATTCTCGCTGTCCTTCCAAGAACCCTAAGGTCTACACGTACCTGAGGAATTCCATCGTCCAACGTTTCAGAGATAACCCGTCATCCAAAATCACTTTCACCGATGTGCGAAAGACACTAGTCGGAGACGTGGGATCAATTCGAAGGGTTTTTGATTTTCTGGAAGCATGGGGTTTGATAAATTATTCTCCTTCAACTCTTAACAAGCCCCTCAAGTGGGAGGACAAAGAAACTAAATCTGCTTCCTCTGTTTCACATGGAGAGGCTGGGGCTGTCCCCCCTGATTCTTCTTCCGCTCCTAGCAGAGAAGTGTCAAAAAGAGTTTGCAGTGGCTGCAAATCTAATTGCAGCATTGCCTGCTTTGCTTGCGACAAGTATGACCTGACTCTTTGTGCTCGGTGCTATGTCCGTGGAAACTATCGGGTCGGAGTCACTTCTTCAGATTTTCGGCGGGTTGAGATCAGTGAAGACATGAGAACAGATTGGACGGACAAAGAGACTTTGCATCTTCTTGACGCCGTTATGCATTTTGGAGATGATTGGAAGAAAATTGCCCAGCACGTTGGTGGTAGAAGTGAAAAAGAATGTGTAACTCATTTTGTCAAGCTTCCTTTCGGGGAGCAATTCATTAGTTTTCCAGAATCTGTGGATAATGATATTAAACATATCTATTTGAAAGACCAAGGAGATGCTAATTTTGGATCAGTTCATACAAGTACAATCTCTCCCAGAAAAAGAATTCGACTAACACCTCTTGCAGATGCAAGCAACCCCATTATGGCTCAGGCTGCGTTTTTGTCTGCACTGGCTGGTGTTGAAGTTGCAGTGGCTTCTGCTCATGCAGCAGTGGCGAACTTGTCAGAGATAGCAGATGTTGATGTTGCACCTGACGGAGGCACTGGATCTCATGTCATTATGGGAGATTCTGGAGATGTAAAGTTGCAGATTAGGAAGGAGGAGGTGGAAGTGGAAAGAGCAACCTCCGAGATTATCGACGTCCAGATGAAGGAAATGCAAGATAAGCTGGACAGCTTTGAGGAATTGGATTTGCAGTTGGAAAAAGAAAGGCAGCAATTTGAACAAGTGAAAAACATTCTCTTTGCCGATCATCTCAACCTCGTATTCAATAAAAGCTCTGCTGCCGAGGATGCGGAAGACAACAATGTAAGAACCAATTTATAA 1458 45.68 MADSPVRERLNGTIANYPPPSHSFKLEIPPVDSSQQTPPTTAPAPAPAPAPPLIFDPSPSSDANLIHIPSYSRWFSWNNIHDCELRFLPEFFDSRCPSKNPKVYTYLRNSIVQRFRDNPSSKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYSPSTLNKPLKWEDKETKSASSVSHGEAGAVPPDSSSAPSREVSKRVCSGCKSNCSIACFACDKYDLTLCARCYVRGNYRVGVTSSDFRRVEISEDMRTDWTDKETLHLLDAVMHFGDDWKKIAQHVGGRSEKECVTHFVKLPFGEQFISFPESVDNDIKHIYLKDQGDANFGSVHTSTISPRKRIRLTPLADASNPIMAQAAFLSALAGVEVAVASAHAAVANLSEIADVDVAPDGGTGSHVIMGDSGDVKLQIRKEEVEVERATSEIIDVQMKEMQDKLDSFEELDLQLEKERQQFEQVKNILFADHLNLVFNKSSAAEDAEDNNVRTNL 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19605658 19608589 + BLOR09219 Blo18g00731 74035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00731 485 Pfam Myb-like DNA-binding domain 252 295 IPR001005 -
Blo18g00731 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 288 IPR017930 -
Blo18g00731 485 PANTHER SWI/SNF COMPLEX-RELATED 31 477 - -
Blo18g00731 485 SUPERFAMILY Homeodomain-like 251 300 IPR009057 -
Blo18g00731 485 SMART sant 250 298 IPR001005 -
Blo18g00731 485 ProSiteProfiles SWIRM domain profile. 66 163 IPR007526 GO:0005515
Blo18g00731 485 CDD SANT 254 295 IPR001005 -
Blo18g00731 485 Gene3D - 250 299 - -
Blo18g00731 485 Pfam SWIRM domain 69 154 IPR007526 GO:0005515
Blo18g00731 485 ProSiteProfiles Myb-like domain profile. 251 296 IPR001005 -
Blo18g00731 485 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 31 477 - -
Blo18g00731 485 MobiDBLite consensus disorder prediction 40 54 - -
Blo18g00731 485 SUPERFAMILY Homeodomain-like 63 167 IPR009057 -
Blo18g00731 485 Gene3D - 72 157 IPR036388 -
Blo18g00731 485 Pfam SWIRM-associated region 1 408 474 IPR032451 -
Blo18g00731 485 Coils Coil 408 457 - -
Blo18g00731 485 MobiDBLite consensus disorder prediction 172 194 - -
Blo18g00731 485 ProSiteProfiles SANT domain profile. 249 300 IPR017884 -
Blo18g00731 485 MobiDBLite consensus disorder prediction 1 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00731 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - qsu:112010646 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01167 Blo-Chr6:35110196 Blo18g00731 Blo-Chr18:19605658 2.60E-41 dispersed
Blo12g01124 Blo-Chr12:28868050 Blo18g00731 Blo-Chr18:19605658 3.65E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1479 . . . . . . Blo18g00731 . Bda01g01574 Bpe02g01767 . Bma01g00692 . . . . . . . Car09g00017 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009874 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 3 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00731 Blo_Chr18 FPKM 0.806565 0.439835 2.348354 1.985436 7.495221 7.634266 9.230357 1.703974 1.616071 1.59619