Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00742 ATGGCCGAAAGTTGGGATGGAAGCAATGACCCCAGTAGCCAGTCGGACGAGAGCATTTATGAAAGATTTCACATTGAACCTATTTATGATGCATTTGTCTGCCCTTTGACGAAGCAAGTAATGCGTGATCCTGTTACTCTAGAAAATGGGCAAACTTTTGAACGAGAAGCAATTGAAAAGTGGTTCAAGGAATGCAAGGATAGTGGAAAGAAGCTAGTCTGTCCATTTACTCTGAAAGAGCTGAGAAGCACTGATCTGAACCCTAGCATTGCTCTACGAAACACCATTGATGAATGGATTGCCAGGAATGACTCTGCTAAGCTTGATATGGCTCGTAGATCCTTGAATCTGGCAAGTCCAGAAAGTGATATATTGCTATCACTCAAATATGTTAAATTCATCTGCCACAAGAGCCGATCCAGTAAGCATGTCACACGTAATTCCGGGCTAATACCTATGATTATTGATATTTTGAAGAGCAGCAGCAGAACTGTTCGCTGTAAAGCGTTGGAGACACTTTGTATTGTCGTGGAGGAAGATGATGATAACAAGGAAATATTCGTTGAGGGTGACACTGTACGCACTATAGTGAAGTTCTTGAGGCATGACCTATCTCAAGAGAGGGAGGTAGCTGTCTCTTTGTTATATGAGCTCTCTAAGTCTGGAATCTTGTGCGAGAAGATAGGATCAATCAATGGTGCAATTTTCCTTTTGGTTGGAATGGCAAGCAGCAAATCGGAGAATGTCTTAACTGTTGAGAAGGCTGAAAAAACGCTGGAGAATTTGGCGAAGTTTGAGAATAATGTGAGACTGATGGCTGAGTGTGGTAGACTACCACCTCTTCTAACTTGTATCCTTGAAGCCCCGCCAGAATTGAAACTCTCAATGGCGACATTTTTGGGTGAACTGGTTCTGGATAATGATGTCAAGGTTCTTGTGGCTAGAACTGTGGGTTCATCTTTGATCAATTTGATGAGAAGTGGTAACAAGCAGTCAAGAGAAGCTGCTTTGAAAGCTCTAAACCAGATCTCCTCTTTTGAGAATAGTGCAAAAGTGTTGATAGAGGAAGGAATACTTCCACCCCTTGTGAGGGATCTTTTTACAGTAGGTGCCAACCAACTTCCTATGCGACTAAAAGAGGTCTCTGCAACAATACTTGCCAATGTTGTCAACTCCGGCTATGAGCTGGATTCCATTCCAGTCGGACCTGATCAGCAGACTACTCTTGTCTCGGAAGACATTGTCCATAATCTGCTACATCTCATTAGCAACACTGGTCCAGCTATTGAATGCAAGCTTCTCCAGGTTCTAGTCGGACTTACTAGTTCTCCATCAACTGTTCTGAATGTTGTTTCTGCAATTAAAAGTTCAGGTGCGACCATCAGTTTAGTTCAGTTTATCGAGGCTCCACAGCATGATTTGCGCTTGGCTTCCATAAAACTTCTCCACAACCTTTCCCCGCACATGGCTCATGACATAGCAGATGCCTTGCATAGCACAGTTAGCCAACTTGTGAGTCTGTTTAGAATCATGTCAGAAAATACTGGAGCAATGGAAGAGCAAGCGGCTGCAGTTGGTCTCTTAGCTGAACTTCCGGAAAGGGATTTGGGGCTCAGCCGACAGATGCTTAATGAAGATGCATTTACAATGGTGCACTCTAAAATAATGATGATTCAGCAAGGGGTGATTCGGGGTGGCCGCTTTGTTACACCATTTCGTGAAGGCTTAGTGCGAATTCTTGCAAGGATTACATTTATCTTGGCCGATGAGCCCGATGCTGTTGCATTTTGCCGTAATCACAATATCGCTGCTTTGTTCATTGAATTGCTTCAGTCTAATGGGCTTGACAATGTGCAGATGGTTTCTGCTGTAGCATTAGAGAACTTGTCGGCAGAATCCAAAAATTTGACGCAAATTCAAGAGTTGCCCACGCCCGGTTTTTGTGCCTTGGTTTTTCCATGTCTTGCCAAACCACCTGTAATGGCAGGATTGTGTAGGCTCCACAAAGGAAAATGTTGTTTGAGAGAAAGCTTTTGTCTTTTGGAAGGACATGCAGCTGACAAATTAGTCGCCCTTTTGGATCATAGAAACGAGAGGGTTGTTGAGGCAGCTCTTGCGGCAATTTCTACTTTGTTGGATGATGGGGTGGAGATTGAACAGGGGGTATTTGTGTTGTGTGATGTAGATGGAGTGAAGCCTATACTCGATGTTTTAATCGAAAAGCGTACGGAAAATCTGCGGAGAAGGAGTGTTTGGTTGGTCGAAAGACTCTTGAGGACAGAGGAAATCGTGGTAGAAGTTGCCGGAAATCCAAACTTGAATACAGCTCTTGTGGATGCATACCAGCATGGCGACTATCGAACCCGGCAAATTGCTGAGCGGGCCCTGAAACACGTGGATAAGCTACCGAACTTCTCGGGAATTTTTACAAAATTGGGATGA 2442 43.9 MAESWDGSNDPSSQSDESIYERFHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKDSGKKLVCPFTLKELRSTDLNPSIALRNTIDEWIARNDSAKLDMARRSLNLASPESDILLSLKYVKFICHKSRSSKHVTRNSGLIPMIIDILKSSSRTVRCKALETLCIVVEEDDDNKEIFVEGDTVRTIVKFLRHDLSQEREVAVSLLYELSKSGILCEKIGSINGAIFLLVGMASSKSENVLTVEKAEKTLENLAKFENNVRLMAECGRLPPLLTCILEAPPELKLSMATFLGELVLDNDVKVLVARTVGSSLINLMRSGNKQSREAALKALNQISSFENSAKVLIEEGILPPLVRDLFTVGANQLPMRLKEVSATILANVVNSGYELDSIPVGPDQQTTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSPSTVLNVVSAIKSSGATISLVQFIEAPQHDLRLASIKLLHNLSPHMAHDIADALHSTVSQLVSLFRIMSENTGAMEEQAAAVGLLAELPERDLGLSRQMLNEDAFTMVHSKIMMIQQGVIRGGRFVTPFREGLVRILARITFILADEPDAVAFCRNHNIAALFIELLQSNGLDNVQMVSAVALENLSAESKNLTQIQELPTPGFCALVFPCLAKPPVMAGLCRLHKGKCCLRESFCLLEGHAADKLVALLDHRNERVVEAALAAISTLLDDGVEIEQGVFVLCDVDGVKPILDVLIEKRTENLRRRSVWLVERLLRTEEIVVEVAGNPNLNTALVDAYQHGDYRTRQIAERALKHVDKLPNFSGIFTKLG 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 19986181 19989894 - BLOR09230 Blo18g00742 74046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00742 813 Gene3D - 114 227 IPR011989 -
Blo18g00742 813 Pfam U-box domain 30 103 IPR003613 GO:0004842|GO:0016567
Blo18g00742 813 ProSiteProfiles U-box domain profile. 27 106 IPR003613 GO:0004842|GO:0016567
Blo18g00742 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 113 IPR013083 -
Blo18g00742 813 SUPERFAMILY ARM repeat 122 444 IPR016024 -
Blo18g00742 813 Gene3D - 228 317 IPR011989 -
Blo18g00742 813 Gene3D - 318 486 IPR011989 -
Blo18g00742 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 810 - -
Blo18g00742 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 810 - -
Blo18g00742 813 CDD RING-Ubox_PUB 32 77 IPR045210 -
Blo18g00742 813 SUPERFAMILY ARM repeat 457 801 IPR016024 -
Blo18g00742 813 SMART arm_5 672 713 IPR000225 GO:0005515
Blo18g00742 813 SMART arm_5 180 220 IPR000225 GO:0005515
Blo18g00742 813 SMART arm_5 306 345 IPR000225 GO:0005515
Blo18g00742 813 SMART arm_5 590 631 IPR000225 GO:0005515
Blo18g00742 813 SMART arm_5 138 178 IPR000225 GO:0005515
Blo18g00742 813 SMART arm_5 346 391 IPR000225 GO:0005515
Blo18g00742 813 SMART arm_5 265 305 IPR000225 GO:0005515
Blo18g00742 813 SMART Ubox_2 31 99 IPR003613 GO:0004842|GO:0016567
Blo18g00742 813 Gene3D - 573 804 IPR011989 -
Blo18g00742 813 SUPERFAMILY RING/U-box 23 109 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01639 Blo18g00742 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00011 Blo-Chr4:109096 Blo18g00742 Blo-Chr18:19986181 3.20E-36 dispersed
Blo18g00742 Blo-Chr18:19986181 Blo03g01130 Blo-Chr3:37761378 8.29E-17 dispersed
Blo18g00742 Blo-Chr18:19986181 Blo18g00747 Blo-Chr18:20192362 1.12E-16 proximal
Blo02g00313 Blo-Chr2:3177315 Blo18g00742 Blo-Chr18:19986181 1.48E-36 transposed
Blo16g01073 Blo-Chr16:39280455 Blo18g00742 Blo-Chr18:19986181 7.48E-140 transposed
Blo01g01639 Blo-Chr1:56211543 Blo18g00742 Blo-Chr18:19986181 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00742 - - pop:7496852 1231.47