Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00782 ATGGACAGGTCGGAGCTGGCAGCGGCAGTGGCGATGGACACTGGACAGAGTCGGAGCTCGGACGACGGACGGAGATCGGACCTGGCAGAGTGGCACCGTCGATGGATGGAGCTCGGAGGCCGGAGCTCGCTGGAGAGTGCCGACTGCCGAGTGGAGCGATGGATGGAGCTGGAGCTTGGAGTAGGAGCGACGGTCGATGGACGGACTGGCGACGGTCGATGGATGGAGCGACGGTCGATGGATGGAGCTCGGAGCTCGCTGGACGTTGGCGACGGTCGATGGATGGAGCTCGGACTTGGATCTCGCTGGCTGACGATTGACGGAGCTCGGATCTCGCTCTTCGGCGCCTCGGCGGTCGCTGGCAGCTGCTCGGTCGAGGTCGACTCTCGGGCTGGGCACTGGGTAGGGGAGGGACTAGGGAGGAGGAGGTCGATGGACTTGAGTCTGCATGGCATCTTTTGGTGTACAAATGAAGGGTCAGGGGTGCTCCAAGATTGCAAGAAAACTAACTTCCACCATTACGATGATGTACCTGGGGAAGAGCAAGACGAAGTTGTCGATGTTCCTAAATTTGGGAGCTATAAAGAGGTGACAGAGTTGCAGGTAGCTCCCAAATTTACGAATATCAACAACTTCGTCTTGCTCGACAAGAAAACCGTAGTACTTATCTCTCAAAATATCGCCGTTGAGCTTTACTCCAACATTGTACTAAGCATCGCCAAGGATATCGTGGTTCATGAAGCAACGGCGTCATATGGTTTCTGCGATTCGTCAAGACTCAAAAGGCACTGTAAAGAAAAATCTGGAGCTGCAATGGAGGGAAGCAAGAGGAAGGGCTACGTATTGGCCGTCTCAGCCGGGCTAAATGCAGCTCTCGCTGCCATTTCGGCTAAGCTTTTCACCTCTATGGTGATTAGGTATGGCTTGGTCATAGTGTTTAATATAACAATGTGGGGATGCTATGTAAAAAGCCTCAAGGAACTGTCATCTCTACAAGCTACAGTCACAAACTTTGCCACTAACTTCCTCAGTTCTGGCCTTGCCGGATTCCTCTTGTTTGAAGAAGCGTTATCATATCAGCTCGATTTCTACTTGTCTGTGGTTTTCGCCTCTTTGATCGCTGCTTTTGCTTTACAGCTTGCTTTTACCTACCCGCAGGAATCATTAATGGATGACGGGGGGCATCGTGAAAATGGAAGACACAAAGCCGAGCAATATAAGGCAGCTCATAGCCAGTGGTTAATGCAAACCCAGCCGTCAATGAAACAGATAATGGGTATAATGGCTGAAAGAGACGCAGCTATTCAGGAGCGAAATTTGGCCCTGTCTGAGAAAAAGGCAGCCTTTGCTGAGCGAGATATGGCAATATTGCAACGGGATACAGCAATTGCAGAAAGAAATAATGCATTATTGGAAAGAGACAATGCTATTGCAACTCTTCAATTCCGTGAAAACTCCTTGAGCAGTGGTAATATGTCATGTCCAGCAGGTTGCCAAATTGCACGTGGAGTCAAGCATATGCATCATCCACAGCAACACTCACACAATGGTCCTCACATGCATGAAGGTCCATATAGTAATAGGGAAGTACACCCAATAGATGCTATCCCTATTTCACCAGTACCTTCAGAAGCCACAAAGGCAAAGCGGATCAAGCGGACTAAGGAAACTAAAGCAGTGTTACCTAATAAAAAAACTTCAAAACCTTCAAGAAAGGCTAAGAGGGAGGGTGAGGACTTGAACAAGGTGATGTTTGGCAAGCCACATGAGTGGAAGAATGGACATTATATAGGTGGTGGAGGTGATGATCTTAACAAACAATTTGCGACGTCAAAGTCTGATTGGAAGGTTCAGGACCTTGGTCTGAACCAGGTTGCTTTTGATGAGTCAACCATGCCTGCACCAATATGCTCCTGTACTACAATCCCTAGACAGTGCTACAAATGGGGAAATGGTGGGTGGCAATCTGCTTGTTGCACAACCACCATGTCAATGTATCCTCTACCAGCAGTGCCGAACAAACGCCATGCCCGTGTGGGTGGTCGAAAGATGAGTGGAAGTGCTTTTAACAAACTTCTTAGCAGGCTTGCTGCAGAAGGCCACGATCTCTCAGCTCCGGTTGATCTTCAAAATCACTGGGCCAAGCATGGGACAAATCGGTACATCACAATAAAGTAG 2178 49.17 MDRSELAAAVAMDTGQSRSSDDGRRSDLAEWHRRWMELGGRSSLESADCRVERWMELELGVGATVDGRTGDGRWMERRSMDGARSSLDVGDGRWMELGLGSRWLTIDGARISLFGASAVAGSCSVEVDSRAGHWVGEGLGRRRSMDLSLHGIFWCTNEGSGVLQDCKKTNFHHYDDVPGEEQDEVVDVPKFGSYKEVTELQVAPKFTNINNFVLLDKKTVVLISQNIAVELYSNIVLSIAKDIVVHEATASYGFCDSSRLKRHCKEKSGAAMEGSKRKGYVLAVSAGLNAALAAISAKLFTSMVIRYGLVIVFNITMWGCYVKSLKELSSLQATVTNFATNFLSSGLAGFLLFEEALSYQLDFYLSVVFASLIAAFALQLAFTYPQESLMDDGGHRENGRHKAEQYKAAHSQWLMQTQPSMKQIMGIMAERDAAIQERNLALSEKKAAFAERDMAILQRDTAIAERNNALLERDNAIATLQFRENSLSSGNMSCPAGCQIARGVKHMHHPQQHSHNGPHMHEGPYSNREVHPIDAIPISPVPSEATKAKRIKRTKETKAVLPNKKTSKPSRKAKREGEDLNKVMFGKPHEWKNGHYIGGGGDDLNKQFATSKSDWKVQDLGLNQVAFDESTMPAPICSCTTIPRQCYKWGNGGWQSACCTTTMSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSAPVDLQNHWAKHGTNRYITIK 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 22560307 22576017 - BLOR09270 Blo18g00782 74086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00782 725 Pfam GAGA binding protein-like family 390 725 IPR010409 -
Blo18g00782 725 MobiDBLite consensus disorder prediction 1 25 - -
Blo18g00782 725 MobiDBLite consensus disorder prediction 546 562 - -
Blo18g00782 725 SMART GAGA_bind_2 390 725 IPR010409 -
Blo18g00782 725 MobiDBLite consensus disorder prediction 545 578 - -
Blo18g00782 725 PANTHER - 390 725 IPR010409 -
Blo18g00782 725 PANTHER PROTEIN BASIC PENTACYSTEINE6 390 725 - -
Blo18g00782 725 Coils Coil 440 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00782 - - - jre:108983830 565.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00922 Blo-Chr4:10918697 Blo18g00782 Blo-Chr18:22560307 3.05E-65 dispersed
Blo10g00757 Blo-Chr10:23765993 Blo18g00782 Blo-Chr18:22560307 1.52E-94 dispersed
Blo18g00782 Blo-Chr18:22560307 Blo09g00402 Blo-Chr9:14958420 1.43E-21 dispersed
Blo07g01081 Blo-Chr7:30611378 Blo18g00782 Blo-Chr18:22560307 1.15E-78 transposed
Blo13g00531 Blo-Chr13:27086332 Blo18g00782 Blo-Chr18:22560307 1.82E-109 wgd
Blo17g00751 Blo-Chr17:23579358 Blo18g00782 Blo-Chr18:22560307 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1061 . . . . . . . . . . . . . . . . . Bhi04g00240 . . . Hepe10g0135 . . Cla08g01437 Cam08g1917 Cec08g1493 . . . Cre08g1393 Cone4ag1956 Cone7ag1869 . . . . . Cme03g01896 . Blo18g00782 . . . . Bma01g00731 . . . . Cma12g00420 . . Car15g00648 . . . . . . . . . . . . . . . . Lsi08g01338 . Chy03g01399 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo06g00996 . 1 280 BBR/BPC Transcription factor family AT2G01930 53.0 3.0e-78 288.9
Blo11g00754 . 2 274 BBR/BPC Transcription factor family AT2G01930 55.3 1.8e-75 279.6
Blo06g00997 . 2 271 BBR/BPC Transcription factor family AT2G01930 54.5 2.2e-73 272.7
Blo11g00754 . 154 274 BBR/BPC Transcription factor family AT2G35550 57.9 4.0e-41 165.2
Blo06g00997 . 151 271 BBR/BPC Transcription factor family AT2G35550 57.9 6.8e-41 164.5
Blo06g00996 . 163 280 BBR/BPC Transcription factor family AT2G35550 55.9 6.3e-39 157.9
Blo06g00997 . 2 271 BBR/BPC Transcription factor family AT1G68120 51.2 2.9e-67 252.3
Blo18g00782 . 616 725 BBR/BPC Transcription factor family AT1G68120 55.5 5.4e-37 151.8
Blo13g00531 . 102 269 BBR/BPC Transcription factor family AT2G21240 67.5 1.3e-63 240.4
Blo17g00751 . 1 336 BBR/BPC Transcription factor family AT2G21240 50.6 1.9e-59 226.5
Blo13g00531 . 1 269 BBR/BPC Transcription factor family AT4G38910 59.9 1.7e-57 219.9
Blo17g00751 . 88 336 BBR/BPC Transcription factor family AT5G42520 56.9 2.0e-74 276.2
Blo18g00782 . 477 725 BBR/BPC Transcription factor family AT5G42520 55.8 1.6e-71 266.5
Blo11g00754 . 154 274 BBR/BPC Transcription factor family AT2G35550 57.9 4.0e-41 165.2
Blo06g00997 . 151 271 BBR/BPC Transcription factor family AT2G35550 57.9 6.8e-41 164.5
Blo06g00996 . 163 280 BBR/BPC Transcription factor family AT2G35550 55.9 6.3e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13611 PF06217 GAGA_bind 1.80E-103 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00782 Blo_Chr18 FPKM 14.235514 15.00937 75.061096 78.119858 39.864807 40.095253 42.150013 46.907181 41.663712 42.446545