Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00783 ATGGCTCGTACGAAGCAGACGGCTCGCAAATCAACTGGCGGAAAGGCACCGAGGAAACAGCTCGCCACGAAGGCTGCTAGGAAATCGGCGCCGACGACGGGGGGAGTCAAAAAGCCCCATCGTTATCGTCCTGGAACCGTTGCTCTTCGTGAGATTCGTAAGTACCAGAAGAGCACCGAACTTTTGATCCGCAAGTTGCCGTTCCAGCGGCTAGTACGTGAAATAGCTCAGGATTATAAGACGGATTTGAGATTCCAGAGCCACGCTGTTCTTGCGCTACAGGAGGCTGCGGAGGCATATTTGGTGGGGCTATTCGAAGACACCAACCTGTGCGCTATCCACGCGAAGAGGGTGACAATCATGCCGAAAGACATTCAGCTAGCCCGGCGAATTCGCGGCGAGCGCGCTTGA 411 55.23 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 22623448 22624163 + BLOR09271 Blo18g00783 74087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00783 136 ProSitePatterns Histone H3 signature 2. 67 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Blo18g00783 136 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
Blo18g00783 136 SUPERFAMILY Histone-fold 2 133 IPR009072 GO:0046982
Blo18g00783 136 PRINTS Histone H3 signature 3 17 IPR000164 GO:0000786|GO:0003677|GO:0030527
Blo18g00783 136 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Blo18g00783 136 PRINTS Histone H3 signature 34 55 IPR000164 GO:0000786|GO:0003677|GO:0030527
Blo18g00783 136 PRINTS Histone H3 signature 58 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Blo18g00783 136 PRINTS Histone H3 signature 80 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
Blo18g00783 136 PRINTS Histone H3 signature 98 114 IPR000164 GO:0000786|GO:0003677|GO:0030527
Blo18g00783 136 PRINTS Histone H3 signature 114 135 IPR000164 GO:0000786|GO:0003677|GO:0030527
Blo18g00783 136 PANTHER - 1 136 - -
Blo18g00783 136 MobiDBLite consensus disorder prediction 1 43 - -
Blo18g00783 136 Gene3D Histone, subunit A 2 136 IPR009072 GO:0046982
Blo18g00783 136 Pfam Core histone H2A/H2B/H3/H4 1 132 IPR007125 GO:0003677
Blo18g00783 136 PANTHER HISTONE H3 1 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
Blo18g00783 136 SMART h35 34 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00783 K11253 H3; histone H3 - smo:SELMODRAFT_229248 266.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01136 Blo-Chr4:18661427 Blo18g00783 Blo-Chr18:22623448 8.47E-95 dispersed
Blo07g00651 Blo-Chr7:21335649 Blo18g00783 Blo-Chr18:22623448 1.55E-92 dispersed
Blo10g00125 Blo-Chr10:1435443 Blo18g00783 Blo-Chr18:22623448 3.44E-93 dispersed
Blo16g00300 Blo-Chr16:7348076 Blo18g00783 Blo-Chr18:22623448 1.40E-78 dispersed
Blo18g00783 Blo-Chr18:22623448 Blo06g00070 Blo-Chr6:2551631 1.65E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00783 . Bda01g01526 . . Bma01g00733 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000133 8 11 8 7 8 7 11 7 5 4 6 7 6 5 6 10 7 12 7 7 6 8 7 7 6 4 7 9 7 5 215
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00783 Blo_Chr18 FPKM 15.731884 21.136217 20.174946 16.131504 20.148346 19.593214 23.314333 27.003716 30.62155 29.480728