Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00796 ATGACCCATTTTTTCTCCACCTTTCTTCTTCTGATTCTCCTTCTCCTCTTGCACGATCCTTGTCTTTCTTCATCTCCGGTCATCTCCGAGCTCTTCGGAAAATGGTGTGAACAACATGGAAAAGGGTATTCTACAGAAGCAGAGAAACTCTACAGGCTCAAAGTGTTTGAAGATAACTATGCCTTCGTTAACCATCACAATGTTGGAAATTCTTCCTACTCCCTCTCTCTCAACGCGTTCGCCGATCTTACCCACCACGAGTTCAAGGCTTCTCGTTTGGGTCTTTCTGCTTCTGGAATTTTGGTAATCCAAAACAATTCATCCGTAGTTTTATTCATTTCATTGGTGATAGAACAACATAGCAAGTTGTTCTTCGCAATCTGCCGTCATATTTCAGGTGGGTGTTGGGCGTTTTCGGCGACTGGAGCTATTGAAGGAATCAATAAGCTCGTCACTGGATCTCTTATTAGCCTTTCGGAACAAGAATTGATTGATTGTGACCGATCCTATAACAGCGGATGCGAGGGTGGACTTATGGATTATGCGTTTAAATTTGTCATCGATAACAAAGGAGTTGACACCGAAGAAGATTACCCATTTCAAGCTCATGACAAGTCCTGCAATAAAGGAAAGACAATCACTGGTTGCTGTTATCCTTTCTTATGTCAGTTATATGTATTGAACGGGATTTTCAATGGTCCATGTTCGACTTCCTTGGATCATGCAGTGTTGATCGTAGGGTACGGATCGAAAAATGGAGCGGACTATTGGATCGTGAAGAACTCGTGGGGTTCGCATTGGGGGATGGACGGCTATATTCACATGGAGAGAAACAGTGGGAATTCACATGGAGTTTGTGGTATAAACATGTTGGCTTCATATCCAACAAAGACAAGTCCAAATCCTCCTCCTCCTCCGCCTTCTCCGGGTCCTACAAAATGTGATCTTCTAACTCACTGCAGACAAGAGGAGACGTGCTGTTGTTCGAAGCAATTTCTTGGGATTTGCTTTTTGTGGAAATGCTGTGGGTTGGATTCTGCTATTTGCTGTGAAGACAAGCTCCATTGCTGTCCTCATGATTACCCCATTTGTGATGTTAAGAGGAACTTATGCCTCAAGCAATCAAACAGTACAGAAATGGAAGCAATTCAGAGGAGGGGTTATCCTGCAAAATCTAGCAGTTGGAACAGCTTCATTGAAGCCTGGATTCTTTGA 1215 43.29 MTHFFSTFLLLILLLLLHDPCLSSSPVISELFGKWCEQHGKGYSTEAEKLYRLKVFEDNYAFVNHHNVGNSSYSLSLNAFADLTHHEFKASRLGLSASGILVIQNNSSVVLFISLVIEQHSKLFFAICRHISGGCWAFSATGAIEGINKLVTGSLISLSEQELIDCDRSYNSGCEGGLMDYAFKFVIDNKGVDTEEDYPFQAHDKSCNKGKTITGCCYPFLCQLYVLNGIFNGPCSTSLDHAVLIVGYGSKNGADYWIVKNSWGSHWGMDGYIHMERNSGNSHGVCGINMLASYPTKTSPNPPPPPPSPGPTKCDLLTHCRQEETCCCSKQFLGICFLWKCCGLDSAICCEDKLHCCPHDYPICDVKRNLCLKQSNSTEMEAIQRRGYPAKSSSWNSFIEAWIL 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23336330 23339053 + BLOR09284 Blo18g00796 74100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00796 404 Gene3D Cysteine proteinases 129 222 - -
Blo18g00796 404 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 239 249 IPR025660 -
Blo18g00796 404 Gene3D - 22 96 - -
Blo18g00796 404 Pfam Papain family cysteine protease 228 295 IPR000668 GO:0006508|GO:0008234
Blo18g00796 404 Pfam Papain family cysteine protease 133 211 IPR000668 GO:0006508|GO:0008234
Blo18g00796 404 Gene3D Granulin 312 384 IPR037277 -
Blo18g00796 404 Gene3D Cysteine proteinases 223 298 - -
Blo18g00796 404 PANTHER OS05G0508300 PROTEIN 221 331 - -
Blo18g00796 404 PANTHER OS05G0508300 PROTEIN 17 210 - -
Blo18g00796 404 PRINTS Papain cysteine protease (C1) family signature 256 262 IPR000668 GO:0006508|GO:0008234
Blo18g00796 404 PRINTS Papain cysteine protease (C1) family signature 129 144 IPR000668 GO:0006508|GO:0008234
Blo18g00796 404 PRINTS Papain cysteine protease (C1) family signature 241 251 IPR000668 GO:0006508|GO:0008234
Blo18g00796 404 Pfam Granulin 325 372 IPR000118 -
Blo18g00796 404 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 221 331 - -
Blo18g00796 404 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 17 210 - -
Blo18g00796 404 SMART GRAN_2 314 371 IPR000118 -
Blo18g00796 404 CDD Peptidase_C1A 133 294 IPR039417 -
Blo18g00796 404 SMART pept_c1 116 296 IPR000668 GO:0006508|GO:0008234
Blo18g00796 404 SUPERFAMILY Cysteine proteinases 30 296 IPR038765 -
Blo18g00796 404 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 256 275 IPR025661 -
Blo18g00796 404 Pfam Cathepsin propeptide inhibitor domain (I29) 32 88 IPR013201 -
Blo18g00796 404 SUPERFAMILY Granulin repeat 311 344 - -
Blo18g00796 404 SMART Inhibitor_I29_2 32 88 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00796 - - - tcc:18591464 493.426
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00796 Blo-Chr18:23336330 Blo04g01266 Blo-Chr4:25890548 4.83E-92 dispersed
Blo18g00796 Blo-Chr18:23336330 Blo12g00966 Blo-Chr12:27768048 1.88E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00796 Blo_Chr18 FPKM 36.878746 42.230183 14.464413 15.489824 17.477003 15.696009 17.104622 20.014343 20.020998 21.882704