Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00799 ATGCCAAGAAGCCTGAGAGAGCGCGCATTTCCGTCTTTCAATCTCCGAGCAGACGCTTCCACTGAGAGTGCATTTGTCACTATGACCGACGGCGACGATGGAGCACGGCGTCGTACGGTGATCAATGAATACCGCAAGCTGCTTCTCCAACAGAGAGAGATTGAGCCCAGAGTTGAATCCCTGAAGGAGAAAGAGCGTGCATCTAGAAAAGAATTCAGCAAAACAGAAGATGAGTTGAAGTCACTTCAGAGTGTTGGCCAGATTATAGGAGAAGTTCTTAGACCACTTGGCAATGAACGCTTGATTGTCAAAGCGAGCAGTGGGCCTAGGTACGTTGCTGGTTGTCGCAGCAAAATGGATAAGGAAAAATTGATAGCCGGCACTAGAGTGGTTCTTGATATGACTACACTCACCATTATTAGAGCTCTTCCACGCGAAGTTGATCCAACTGTTTATAACATGCTGCATGAAGATCCTGAAAATGTTAGCTACTCTGCTGTTGGTGGCTTGTCTGATCAAATTAGAGAATTGAGGGAGTCTATTGAGTTACCTCTCACGAATCCCGAGATTTTCCTGAGGGTTGGAATAAAACCTCCTAAGTGTGTTCTTCTTTATGGGCCACCAGGTACTGGCAAGACTTTGTTAGCCAGAGCAATTGCAAGCAACATTGATGCGAACTTCTTAAAGGTAGTTGTTTCTAGTGCCATTATTGATAAGTACATTGGAGAAAGTGCAAAATTGATATGTGAGATGTTTCGATATGCACAAGACCACCCGCCCTGCATCATTTTTATGGATGAGATTGATGCCATCGGAGGTCGAAGATTCAGTGAAGGAACAAGTGCAGATCGTGAAATTCAGAGAACGCTAATGGAGTTGCTGAATCAGCTTGATGGTTTTGATCAACTTGGAAAGGTTAAAGTAATCATGGCAACTAATCGGCCTGATGTTCTTGACCCTGCACTTCTTCGACCGGGGCGGTTGGATAGGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAGATCCTTAAGATTCATGCAGCTGGGATCGCCAAACATGGGGAGATTGACTATGAGGCTGTTGTTAAACTTGCAGAGGGATTTAATGGTGCTGACCTCCGTAATGTTTGCACTGAAGCTGGAATGGCTGCTATACGTGTTGAGCGCGATTATGTCATCCATGAAGACTTTATGAAGGCTGTAAGGAAGTTGAACGAAGTGAAAAAACTGGAGTCTAGTGCACATTATAGTGCTGACTTTGGAAAAGATTAG 1281 44.42 MPRSLRERAFPSFNLRADASTESAFVTMTDGDDGARRRTVINEYRKLLLQQREIEPRVESLKEKERASRKEFSKTEDELKSLQSVGQIIGEVLRPLGNERLIVKASSGPRYVAGCRSKMDKEKLIAGTRVVLDMTTLTIIRALPREVDPTVYNMLHEDPENVSYSAVGGLSDQIRELRESIELPLTNPEIFLRVGIKPPKCVLLYGPPGTGKTLLARAIASNIDANFLKVVVSSAIIDKYIGESAKLICEMFRYAQDHPPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKVIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRVERDYVIHEDFMKAVRKLNEVKKLESSAHYSADFGKD 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23390841 23393751 + BLOR09287 Blo18g00799 74103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00799 426 Gene3D - 155 336 IPR027417 -
Blo18g00799 426 PANTHER - 8 413 - -
Blo18g00799 426 SMART AAA_5 198 338 IPR003593 -
Blo18g00799 426 ProSitePatterns AAA-protein family signature. 306 324 IPR003960 GO:0005524|GO:0016887
Blo18g00799 426 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 47 407 IPR005937 GO:0005737|GO:0030163|GO:0036402
Blo18g00799 426 CDD AAA 168 336 - -
Blo18g00799 426 Pfam Proteasomal ATPase OB C-terminal domain 89 144 IPR032501 -
Blo18g00799 426 Pfam AAA+ lid domain 359 401 IPR041569 -
Blo18g00799 426 Pfam ATPase family associated with various cellular activities (AAA) 202 336 IPR003959 GO:0005524|GO:0016887
Blo18g00799 426 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 8 413 - -
Blo18g00799 426 Gene3D - 337 407 - -
Blo18g00799 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 409 IPR027417 -
Blo18g00799 426 Coils Coil 58 78 - -
Blo18g00799 426 Gene3D - 50 154 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00799 K03064 PSMC6, RPT4; 26S proteasome regulatory subunit T4 - pda:103708147 699.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00651 Blo-Chr17:15270027 Blo18g00799 Blo-Chr18:23390841 4.34E-93 dispersed
Blo18g00799 Blo-Chr18:23390841 Blo10g00611 Blo-Chr10:18703731 6.82E-104 dispersed
Blo17g00776 Blo-Chr17:24804373 Blo18g00799 Blo-Chr18:23390841 2.18E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1001 . . . . . . . . Cmo05g00271 . . . . . . . . Bhi04g00204 . . . . . . Cla08g01460 Cam08g1946 . Cco08g1659 Clacu08g1636 . Cre08g1422 . . Cone17ag1362 Cone20ag0119 . . . Cme03g01925 . Blo18g00799 Bda08g01258 Bda01g01512 Bpe02g01708 . Bma01g00746 . . . . . Cma05g00268 Car05g00222 . Cpe11g00221 . . . . . . . . . . . . . . . Lsi08g01368 Csa02g02085 Chy03g01429 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002198 2 2 2 2 2 1 3 1 2 2 1 1 4 2 2 4 1 1 4 1 2 2 2 2 0 2 3 0 4 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00799 Blo_Chr18 FPKM 1.070261 2.195529 2.951671 2.749877 1.924019 0.846861 1.565044 2.045972 2.968793 1.872841