Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00801 ATGGCGGGAGGGTTTCTGGTGGATCTCTCAGGTCGACACTTAAATGTGATCCCAAGTTTTGATATGGAGCTCTGCTCATTGCAGCCGAACTTTCGCTGTCGATTTGTTAATAGCCCCAAGACTTTTCGCCTACGCTTCTGCACTGTAGCTTCGGTTCAAAATTCAAACAACCATGTATCTTCACCTGAACATCGGGGTGGGATGTTTATCCTAGGCATGGGTTTCGTTGGACAATTCTTCGCTCAAGAGCTGAAGAATCTAGGATGGACTGTCTCTGGAACTTGTAACAACATCACAGAGAAACAGAAACTAATGGAAAAGGGATTTGATGTTTCCCTTTTTGATGCAAGGGAGCCAGTCAACAACACAGTGGACACTCTAGAGGCTCTGAAATACTACACTCACATTCTAGTTTCGATCCCTCCTATAAGGGGTATTGGCGATCCGATGCTTCAGCATGAAGAACTATTGAAGAGTACACTGATGCAAGGAAATCTTCAATGGCTCTGCTATTTGTCATCAACTAGTGTATATGGAGATTGGGGCGGTGCATGGATAGATGAGAATTACCCTACAAAACCTGAAAAAATGGGTAAACTGAGGATTGCGGCTGAGGAGGGATGGCTAAATTTAGGAAGCGAACTTGGGATATCTACACAAGTATTTCGCCTTGGAGGTATCTACGGACCTGGTAGAAGCGCTGTTGATACAATAATCAAGCAGGAACCCTGGTCAGAGGGTCAGAAACTGAGAGCGGGAAGGCAATTCACCTCCAGAATTCATGTCGAAGACATTTGTCAAGCGCTAAGAGCCAGTATCCAGAAGCCTTCTTTCGGGAGAGTTTACAACATAGTCGATGACGGTCCGGCCGCAAGAGAAGAAGTGTTTGCATATGCATGGAACTTAATAGAAAAGAAGTGGCCCGGTATGATCAGGCGATTACCCGAGATAACAAACAAGTCTTTCAGTAAAGCTGGAAGTTGCATTAGGAGGGGCGATAAGCGAGTCTCAAACGACCGCATGAGGAGAGAACTTGGAGTGAAGCTCGTTTATCCGAATTACAAAGCGGGATTGCAAAGTATAATTGAGCAAATGGAGCGCATTGCTTGA 1110 45.23 MAGGFLVDLSGRHLNVIPSFDMELCSLQPNFRCRFVNSPKTFRLRFCTVASVQNSNNHVSSPEHRGGMFILGMGFVGQFFAQELKNLGWTVSGTCNNITEKQKLMEKGFDVSLFDAREPVNNTVDTLEALKYYTHILVSIPPIRGIGDPMLQHEELLKSTLMQGNLQWLCYLSSTSVYGDWGGAWIDENYPTKPEKMGKLRIAAEEGWLNLGSELGISTQVFRLGGIYGPGRSAVDTIIKQEPWSEGQKLRAGRQFTSRIHVEDICQALRASIQKPSFGRVYNIVDDGPAAREEVFAYAWNLIEKKWPGMIRRLPEITNKSFSKAGSCIRRGDKRVSNDRMRRELGVKLVYPNYKAGLQSIIEQMERIA 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23398234 23400583 + BLOR09289 Blo18g00801 74105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00801 369 CDD SDR_a4 68 345 - -
Blo18g00801 369 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 73 365 IPR036291 -
Blo18g00801 369 Pfam NAD dependent epimerase/dehydratase family 71 284 IPR001509 -
Blo18g00801 369 PANTHER EPIMERASE-RELATED 54 366 - -
Blo18g00801 369 Gene3D - 63 367 - -
Blo18g00801 369 PANTHER OS01G0261500 PROTEIN 54 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00801 - - - qsu:112012382 416.387
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g999 . . . . . . . . . . . . . . . . . Bhi04g00201 Tan02g2006 . . . . . . . . . . . . Cone4ag1934 Cone7ag1846 . . . . . Cme03g01927 . Blo18g00801 . Bda01g01511 Bpe02g01706 . Bma01g00748 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01370 Csa02g02083 Chy03g01431 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004726 1 3 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 5 6 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00801 Blo_Chr18 FPKM 6.756491 8.349372 6.067654 7.301654 6.386847 6.2739 6.23082 7.089754 6.414071 7.902004