Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00811 ATGGATGTTGGTGAGTTCAACAAAGAAACAAGAATACCAGGTGGGTCTTCCTCTTCCACATTTTCCCACCTCATCGGAGAATCCTCCGCCGGAGTTGACAGAAGACGATCATCAGAAGCTATACACAATGGCGTTAATTTTCCTCATCTTCTTCGTCAAGAATCGCTTGGCCAACAAAGAGATGTTGTTCCCGATCGAGTCCCTTCACCGGAAGAAAATTTCGGTGCGTTTACCGGTAGATCTAATCCGAGGAACTCACTGGCCGGAATTACTAGATACCGGGAATGTCTAAAGAACCATGCTGCGAACATTGGTGGGAACATTTACGACGGCTGCGGAGAGTTCATGGCGAACGGCGAAGACGGAACCCTAGAAGCCTTGAAATGCGCCGCCTGCGACTGCCACCGAAATTTCCACCGGAAAGAAGTCGACGGCGAGACGCAATTGATCAGTCCGACCAGGAGAACCATTGTCCTCAATCACTTACAGCTTCCACCGCCATTGCCGTCTCCCCACCACCATAAATTCTCAATGGGCCTGAATTTCCACTCAAGCCCTACCGCTCCGATCGTGGCGCCTATGAACGTCGCATTCGGCGGAAACGAATCCTCAAGCGAAGATCTAAACGTCTTCCATTCCAACGCCGAAGGGGTTCCGCACCCACCATTTTCACTCTCGAAGAAGAGGTTCAGAACCAAGTTCACTCAGGAACAGAAGAATAGAATGCTGGAATTCGCAGAGAAAGTGGGGTGGAGAATGCAAAAGCAAAACGAAGAAGAAGTAGACAAGTTCTGCGCAGAAGTAGGAGTAAAGAGACAAGTTCTAAAGGTATGGATGCACAATAATAAAACGACCACCATGAAAAAGCAAAGCGAGAATCATGATCAGCCGTTGGAGATCACAGGAGCAGCCGAGGAAAGAGATTAG 927 48.87 MDVGEFNKETRIPGGSSSSTFSHLIGESSAGVDRRRSSEAIHNGVNFPHLLRQESLGQQRDVVPDRVPSPEENFGAFTGRSNPRNSLAGITRYRECLKNHAANIGGNIYDGCGEFMANGEDGTLEALKCAACDCHRNFHRKEVDGETQLISPTRRTIVLNHLQLPPPLPSPHHHKFSMGLNFHSSPTAPIVAPMNVAFGGNESSSEDLNVFHSNAEGVPHPPFSLSKKRFRTKFTQEQKNRMLEFAEKVGWRMQKQNEEEVDKFCAEVGVKRQVLKVWMHNNKTTTMKKQSENHDQPLEITGAAEERD 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23935729 23936655 - BLOR09299 Blo18g00811 74115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00811 308 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 93 142 IPR006456 -
Blo18g00811 308 Gene3D - 219 288 - -
Blo18g00811 308 MobiDBLite consensus disorder prediction 55 81 - -
Blo18g00811 308 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 92 143 IPR006456 -
Blo18g00811 308 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 67 290 - -
Blo18g00811 308 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 227 283 IPR006455 -
Blo18g00811 308 MobiDBLite consensus disorder prediction 1 36 - -
Blo18g00811 308 SUPERFAMILY Homeodomain-like 223 286 IPR009057 -
Blo18g00811 308 MobiDBLite consensus disorder prediction 287 308 - -
Blo18g00811 308 MobiDBLite consensus disorder prediction 284 308 - -
Blo18g00811 308 MobiDBLite consensus disorder prediction 11 26 - -
Blo18g00811 308 Pfam ZF-HD protein dimerisation region 91 143 IPR006456 -
Blo18g00811 308 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 67 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00811 - - - csv:101216040 359.377
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00796 Blo18g00811 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00280 Blo-Chr3:5690317 Blo18g00811 Blo-Chr18:23935729 2.81E-56 dispersed
Blo17g00363 Blo-Chr17:3880322 Blo18g00811 Blo-Chr18:23935729 1.66E-42 dispersed
Blo18g00229 Blo-Chr18:2257098 Blo18g00811 Blo-Chr18:23935729 1.38E-45 dispersed
Blo18g00811 Blo-Chr18:23935729 Blo17g00244 Blo-Chr17:2439156 2.22E-43 dispersed
Blo15g00309 Blo-Chr15:3512138 Blo18g00811 Blo-Chr18:23935729 5.71E-24 transposed
Blo16g00046 Blo-Chr16:1874806 Blo18g00811 Blo-Chr18:23935729 1.48E-62 wgd
Blo17g00796 Blo-Chr17:25617141 Blo18g00811 Blo-Chr18:23935729 8.72E-171 wgd
Blo18g00811 Blo-Chr18:23935729 Blo04g00916 Blo-Chr4:10741087 1.89E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g953 . . . . . . . . Cmo05g00254 Cmo12g00418 . . . . . . . Bhi04g00174 . . . Hepe10g0633 . . Cla08g01483 Cam08g1972 Cec08g1547 Cco08g1684 Clacu08g1662 . Cre08g1446 Cone4ag1915 Cone7ag1827 Cone17ag1347 Cone20ag0136 . . . Cme03g01952 Blo17g00796 Blo18g00811 Bda08g01280 Bda01g01497 Bpe02g01693 . Bma01g00760 Bma05g00124 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01390 Csa02g02058 Chy03g01454 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13615 PF04770 ZF-HD_dimer 5.50E-29 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00811 Blo_Chr18 FPKM 14.097671 14.491781 7.807745 7.475904 7.360697 6.958303 7.335694 16.364758 14.891878 15.323498