Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00815 ATGCGACGTTTCAAGAAGCCGGTTTTCCTCTGCCTCTCCCTCTCCCTCTTCTCGCCTGCCTTCTCCCCGCCGTTCTCGTCTCGGATTCTACTCCGAAATTTCACTCGCTCTTTCTGCAAGTCCGGCGGAGTGCACGCCTCAGGACTTAATAAATTGCACGCTTTTAATCCAATGGGTGATAGCAGTTGGGCAGTTGGGAGGGATGAGTTGTCGCATGTACATACTGTCTGTAGCAACGACAGGCAAGGGCCATGCATATGGTCATCGTCAGAAGGAGGATGCAAGATTGATTTAGGGAAGCAGATCTTTTGCAACAGATCCTTGAATATGAAAAACATTGTTTCGATAGGCTTTGACATGGATTACACGTTAGCCCAATACAAGCCTGAAACTTTTGAATCGCTTGCCTATGAAGGGACAATAAGAAAATTGGTATATGATTTGGGATATCCCCAAGAGCTGCTGGATTGGACATTTGACTGGAAATACATGGTTAGAGGCTTGGTTCTTGATAAAAAGAGAGGCAACATCTTGAAGATGGATCGACACAAATATGTGAAAGTGGCTTATCATGGATTCAAAGAGTTGTCCAAGGAAGAAAAAGTTGGGACCTATGGGAATACCCTCGTCCGAGATTCTTTTGACGAGCCTGATTATGCTCTCATTGATACTCTCTTTTCGCTGGCTGAAACGTACTTGTTTGCACAATTGGTTGATTTTAAGGACAACAATCCTGATAAAATTCCTGTTGGTGCCGATTACTCCCGTATGTATAAAGATGTTCGAGCTGCTGTTGATCTATGTCATCGAGATGGGACATTGAAGATGATGGTTGCCAAGGATCCTAAAAGGTATATCAATGGAGGTACTGCAATAGTACCCATGTTGAAGATGATCAGGGATTCTGGTCGTTCAACTTTTTTGGTGACAAACAGTTTGTGGGACTATACAAATATCGTGATGAACTTTCTTTGTGGCTCTCGGACACTTGATGGTAATAAGAAATGCAACTTTGATTGGCTTCAGCATTTCGATGTTGTTATTACTGGCAGTGCCAAACCAAGCTTTTTCCATGAGGAAAATCATGCCAATCTATTTGAGGTTGAACCTGAGTCAGGGATGTTAATTAATACCGACAACGGCTCTCCTGTCCCACTGGTAGGAAATACTATGCCATCTTTGTCGCTGAAGGGCCTGAATAAGAGTTGTAGGGTGTTCCAGGGTGGCAATGTCAGACATCTGCATAAACTACTTTCTATTGAATCAAGTTCACAGGTTCTTTATGTTGGGGATCACATCTATGGAGATATATTGCGGAGCAAAAAGCTTCTTGCAGGATGGAGGACAATGCTTGTTGTTCCAGAGCTTGAGACAGAGGTTGAACTTCTATGGGAACTGAGAGATACCCGCAAGCAACTTCAAAAGTTGCGAACTGATCGAGACATAATTGAAGACAGAATACATCATTTGAAGTGGTCTCTCAAGTTTGAAGATGTCAGTGGCGAGAAGAAACAGAGTTTATCTAACGAACTACAATATTTGGAGTCGCAAAGAAAACAAGTGCGATGCTGTCATCAACAGGCTCAACGTGACTGCCACCAAAAGTTTCACAAGGTGTGGGGACAGCTCATGAAGACTGGTTATCAGAATTCTAGGTTTGCTCATCAGGTAGAGAGATTTGCCTGCCTTTACACAAGCCAAGTCACAAACTTGAGGCTCTACTCTCCAGATAAATACTACAGACCCAGCGAAGATTTCATGCCCCACGAATACGTTCGGTTTAGCCATCAGTGGAAATCAAATTGGCCTTTGGCCATTTTTCAGAAAAATAGTAGGGAGAGAGAGATCAGGACCGGAGGGGGGAGAACGACGCGAGACGAAGAGCGAAGGAGAGATCAGGAGAAGGGGTGCAACGAGCGTGTGCGGCGATGCGGGCTGCGAGCGGTGCGGCCTTCTCCGTGGAACGGGTGCGACGACGTGAGGTGCGGAGTTAGGGCTCGGGTTTTGCCTCGCGGGACGATTTCTCTCGTGCGTTGTGATTTCCATTGTCGGACCATGGTAAGTCAATTTTTCGCTGTTGTGTTTCTCCTCTCCTTGGCTATTGTTGCTCGGCATTACGGTGTGACAATAACTGGGACGAATTGGCGATGGCAGGGGAGGGTGAACAACGAGCCCTGTGTTTGCGCTGGACCGGACCGGACCAGACCGGAGCTGGTTCCTCTAGCTGCTCCTCCTATGGCAGACTTTCCACGTGGAGTTTGGTAA 2265 46.09 MRRFKKPVFLCLSLSLFSPAFSPPFSSRILLRNFTRSFCKSGGVHASGLNKLHAFNPMGDSSWAVGRDELSHVHTVCSNDRQGPCIWSSSEGGCKIDLGKQIFCNRSLNMKNIVSIGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLGYPQELLDWTFDWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFKELSKEEKVGTYGNTLVRDSFDEPDYALIDTLFSLAETYLFAQLVDFKDNNPDKIPVGADYSRMYKDVRAAVDLCHRDGTLKMMVAKDPKRYINGGTAIVPMLKMIRDSGRSTFLVTNSLWDYTNIVMNFLCGSRTLDGNKKCNFDWLQHFDVVITGSAKPSFFHEENHANLFEVEPESGMLINTDNGSPVPLVGNTMPSLSLKGLNKSCRVFQGGNVRHLHKLLSIESSSQVLYVGDHIYGDILRSKKLLAGWRTMLVVPELETEVELLWELRDTRKQLQKLRTDRDIIEDRIHHLKWSLKFEDVSGEKKQSLSNELQYLESQRKQVRCCHQQAQRDCHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLRLYSPDKYYRPSEDFMPHEYVRFSHQWKSNWPLAIFQKNSREREIRTGGGRTTRDEERRRDQEKGCNERVRRCGLRAVRPSPWNGCDDVRCGVRARVLPRGTISLVRCDFHCRTMVSQFFAVVFLLSLAIVARHYGVTITGTNWRWQGRVNNEPCVCAGPDRTRPELVPLAAPPMADFPRGVW 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24127582 24141560 - BLOR09303 Blo18g00815 74119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00815 754 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 102 473 IPR008380 -
Blo18g00815 754 Coils Coil 466 486 - -
Blo18g00815 754 SUPERFAMILY HAD-like 100 591 IPR036412 -
Blo18g00815 754 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 67 591 IPR008380 -
Blo18g00815 754 CDD HAD_cN-II 103 566 - -
Blo18g00815 754 MobiDBLite consensus disorder prediction 615 634 - -
Blo18g00815 754 Gene3D - 261 483 IPR023214 -
Blo18g00815 754 Pfam 5' nucleotidase family 102 591 IPR008380 -
Blo18g00815 754 PANTHER BNAA07G31970D PROTEIN 67 591 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00815 - - - vvi:100254078 922.539
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00908 Blo18g00815 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00615 Blo-Chr14:11110791 Blo18g00815 Blo-Chr18:24127582 7.66E-30 dispersed
Blo01g00017 Blo-Chr1:250641 Blo18g00815 Blo-Chr18:24127582 4.13E-56 transposed
Blo17g00800 Blo-Chr17:25748760 Blo18g00815 Blo-Chr18:24127582 0 transposed
Blo12g00908 Blo-Chr12:27261759 Blo18g00815 Blo-Chr18:24127582 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00815 Blo_Chr18 FPKM 92.694916 98.115013 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0