Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00817 ATGAAAGCGTCTTTGAAGGGCAGATACGACTTCGACACGACCGGCACTGCCGCCGCCTCTTTCGCCGTCAACGCTGGCGATCTCAGGCTCCGGGCTTCCCTCACCGACGCTACCGTTGTTAATGGCCCCAGTTTAAACGGATTGGCTTTAGCCGTCGAGAAACCTGGCTTCTTCATCGTTGATTACAACGTCCCCAAAAAGGATTTTCGGTTTCAGTTCATGAACTCGGTCAAAATTGCTGAGAAACCATTGAACTTGACTTACTCTCACAGCAGAGGAGACAATAGAACCATGCTAGATGGCACTTTAGCAATTGATTCAGCTAACAAGGTTTCAGTAAATCACATGGTTGGTACGGGGAATTGGAAATTGAAGTATAATTATGTTCATGGCGGGGTTACTATATTTGAGCCCTCCTATGATGTAGCTAGGAATTCATGGGACCTTGCTCTTTCCCGGAAGGTTTACGATGATGATGTATTCAGAGCTACATATCAAACTTCAAGCCAGGTGTTTGGATTGGAGTGGTCAAGGAACTCAAAAATAAATGGATGTTTCAAGATGATTCCGGTTGATTCTGATGATTTGTGGCATGCTTACAATTTAATTGCTCCAGGAGATACCATGATGGCTGTGACTGTCAGGTATGTCCTCTTATCATTGGTTTCTTATTTTTATTTGTGCTTTTTTTTTTTTGGTTATTGGAGAGGGAGGGGGAGAGTGAAATTAATTAGTTCGCCGAGTTTTTTGTTTGTAATTTTTATATTTGCTGTAATTGAAATTAGTTCATTAAGAAGTACGGGTACAAACACAAGAGAGACATATACTAGGATGTTGGCTATGACAATAACTCGGGCGCGAATAGAAAATTCAATTCCTTGCAAGTATGGTCCAGCCATTGTTGGCTATGAGGCGGCCTTGAATAAATTTTTTGGGAATGTCATGAAGGCTTTCTTAAGATATGTTGATTTCAAAGTCATTCGCTGCACAGTTATTGCTAGTCCTGGTTTTACAAAGGATCAATTTCGTCGTCAATTGTTGTTGGAGGCTGAGAACAAACAGTTGCGACCGATTATTGAGAACAAATCAAGAATCATTCTTGTGCCGACAAGCTCAGGTTACAAGCATAGTTTGAGAGAGGTTTTGGAAGCTCCAAGTGTCATTAATATGATAAAGGACACTAAAGCTGCAAAAGAGGTGCAAGTTCTCAAAGACTTCTTTGACATGTTATCAAAGGATCCGACTCATGCATGCTATGGACCGAAGCACGTTGAAGTTGCCCATGAACAAATGGCTGTCCAAACTCTTCTAATTACCGATGATCTTTTTTGGAATTCGGATATAGCAGTGCGGCAAAAGTACGGCAAATTGGTAGACTCAGTGAGAGATTGTGGTGGCATTGTCCATATATTTTCATCCCCGCACGTCTCTGGAGAACAGCTTTCACAAATTACTGGAATTGCAGCAATTCTTCGGTTCCCCCTGCCTGATCTTGATGACATTGAGATGTGA 1512 41.93 MKASLKGRYDFDTTGTAAASFAVNAGDLRLRASLTDATVVNGPSLNGLALAVEKPGFFIVDYNVPKKDFRFQFMNSVKIAEKPLNLTYSHSRGDNRTMLDGTLAIDSANKVSVNHMVGTGNWKLKYNYVHGGVTIFEPSYDVARNSWDLALSRKVYDDDVFRATYQTSSQVFGLEWSRNSKINGCFKMIPVDSDDLWHAYNLIAPGDTMMAVTVRYVLLSLVSYFYLCFFFFGYWRGRGRVKLISSPSFLFVIFIFAVIEISSLRSTGTNTRETYTRMLAMTITRARIENSIPCKYGPAIVGYEAALNKFFGNVMKAFLRYVDFKVIRCTVIASPGFTKDQFRRQLLLEAENKQLRPIIENKSRIILVPTSSGYKHSLREVLEAPSVINMIKDTKAAKEVQVLKDFFDMLSKDPTHACYGPKHVEVAHEQMAVQTLLITDDLFWNSDIAVRQKYGKLVDSVRDCGGIVHIFSSPHVSGEQLSQITGIAAILRFPLPDLDDIEM 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24178850 24187206 + BLOR09305 Blo18g00817 74121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00817 503 Pfam eRF1 domain 3 397 495 IPR005142 -
Blo18g00817 503 Pfam eRF1 domain 1 183 217 IPR005140 -
Blo18g00817 503 SUPERFAMILY L30e-like 389 495 IPR029064 -
Blo18g00817 503 Gene3D Pelota, domain A 176 220 IPR038069 -
Blo18g00817 503 PANTHER PELOTA 183 218 IPR004405 GO:0070481|GO:0070966|GO:0071025
Blo18g00817 503 SUPERFAMILY Translational machinery components 281 396 - -
Blo18g00817 503 Pfam eRF1 domain 2 280 392 IPR005141 -
Blo18g00817 503 Gene3D eRF1 domain 2 278 394 IPR042226 -
Blo18g00817 503 Gene3D - 395 503 IPR029064 -
Blo18g00817 503 PANTHER PROTEIN PELOTA HOMOLOG 183 218 - -
Blo18g00817 503 PANTHER PROTEIN PELOTA HOMOLOG 281 503 - -
Blo18g00817 503 PANTHER PELOTA 281 503 IPR004405 GO:0070481|GO:0070966|GO:0071025
Blo18g00817 503 SUPERFAMILY Dom34/Pelota N-terminal domain-like 183 217 IPR038069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00817 K06965 PELO, DOM34, pelA; protein pelota - cpap:110809391 363.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00817 Blo-Chr18:24178850 Blo18g00819 Blo-Chr18:24224203 1.47E-44 proximal
Blo10g00263 Blo-Chr10:3711949 Blo18g00817 Blo-Chr18:24178850 1.19E-11 transposed
Blo17g00807 Blo-Chr17:26015262 Blo18g00817 Blo-Chr18:24178850 2.82E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g924 . . . . . . . . . . Cma01g01898 Cma09g00164 Car01g01481 . . Cpe06g00117 . . . . . . . . . . . . . . . Cone4ag1901 Cone7ag1814 . . Lsi04g01652 Csa03g04196 Chy04g00523 . . Blo18g00817 Bda08g01291 Bda01g01491 Bpe02g01687 . Bma01g00765 . . . Cmo09g00161 . . . Car09g00144 . Cpe02g00136 . . . . . . . . . . . . . . . . . Cme04g00587
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011859 2 1 2 1 1 0 2 1 0 1 0 0 2 1 1 1 0 2 2 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00817 Blo_Chr18 FPKM 16.450525 18.696154 83.138374 82.822678 24.518194 23.22757 26.74649 18.866003 18.188597 19.798101