Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00825 ATGCCCACGATAAGCTTGTTAATGGCGACAGCTACAATAAATACTGGGTTTCCTCGTCCTGTCTTTCACCCTCCTTTTCATCTCTTTCTAATTTCATCTGCTTCTCTCTTTACATCTTTCATGGCCGTTCCTTCTTCCAACCTTCTTCTTCTGCTGCTGCTTCTCTTCTCACTAGGAAATGCAGGCTTTGCGGTCCAATTTACTCTCCAAAATCTTTGCACTTATACTATTTGGCCGGGAACTTTATCCGGTAACGGCGCTGCAACTCTCGGCGATGGCGGTTTTCCTTTGGCACCTGCTTCGACTGTCCAACTCACCGCCCCACCAGGCTGGTCCGGCCGGTTCTGGGCCCGAACAGGCTGTGACTTTGACGCGTCCGGAAACGGGAAATGTCAGACCGGCGACTGCGGCTCCCTGAAATGCACGTTCGGGGGCCAACCGCCAGTCACTCTAGTCGAGTTTACCATCGCCTCCAGCAGCAATGAAATGGATTTCTACGACGTAAGCCTAGTCGACGGCTACAACGTCGGAATGGGTGTCCGGGCAACAGGCGGCACTGGAGATTGCCAGTACGCTGGCTGCGTAGCTGATTTGAACGACAACTGTCCGTCGGAATTACAGGTTGCCGAGACGGGATCGGTGGTGGCATGCAAGAGCGCATGCGAGGCATTTAACGCGCCGGAATTTTGCTGCACGGGTGACCACTCCACGCCCCAGACATGCTCCCCGACACAGTACTCGGAGATGTTCAAGCAGTCGTGCCCGACGGCATACAGTTACGCGTACGACGACGCAACCAGCACTTGCACATGCAGCGGGTCGGACTATTTGATCACATTTTGTCCATCCGGGTCGTCGTAA 861 54.12 MPTISLLMATATINTGFPRPVFHPPFHLFLISSASLFTSFMAVPSSNLLLLLLLLFSLGNAGFAVQFTLQNLCTYTIWPGTLSGNGAATLGDGGFPLAPASTVQLTAPPGWSGRFWARTGCDFDASGNGKCQTGDCGSLKCTFGGQPPVTLVEFTIASSSNEMDFYDVSLVDGYNVGMGVRATGGTGDCQYAGCVADLNDNCPSELQVAETGSVVACKSACEAFNAPEFCCTGDHSTPQTCSPTQYSEMFKQSCPTAYSYAYDDATSTCTCSGSDYLITFCPSGSS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24351434 24352376 - BLOR09313 Blo18g00825 74129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00825 286 SMART tha2 67 282 IPR001938 -
Blo18g00825 286 CDD TLP-PA 66 281 - -
Blo18g00825 286 Gene3D Thaumatin 65 282 IPR037176 -
Blo18g00825 286 Pfam Thaumatin family 71 282 IPR001938 -
Blo18g00825 286 PANTHER PATHOGENESIS-RELATED PROTEIN 5 63 282 - -
Blo18g00825 286 PIRSF PR5 29 286 IPR001938 -
Blo18g00825 286 PRINTS Pathogenesis-related protein signature 164 180 IPR001938 -
Blo18g00825 286 PRINTS Pathogenesis-related protein signature 127 156 IPR001938 -
Blo18g00825 286 PRINTS Pathogenesis-related protein signature 272 281 IPR001938 -
Blo18g00825 286 PRINTS Pathogenesis-related protein signature 114 125 IPR001938 -
Blo18g00825 286 PRINTS Pathogenesis-related protein signature 66 78 IPR001938 -
Blo18g00825 286 SUPERFAMILY Osmotin, thaumatin-like protein 66 283 IPR037176 -
Blo18g00825 286 PANTHER OS03G0233200 PROTEIN 63 282 IPR001938 -
Blo18g00825 286 ProSiteProfiles Thaumatin family profile. 64 284 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00825 - - - csv:101217945 415.231
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00815 Blo18g00825 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00113 Blo-Chr16:2656664 Blo18g00825 Blo-Chr18:24351434 8.07E-81 dispersed
Blo17g00186 Blo-Chr17:1904974 Blo18g00825 Blo-Chr18:24351434 3.12E-79 dispersed
Blo18g00825 Blo-Chr18:24351434 Blo12g00882 Blo-Chr12:27019113 4.57E-79 dispersed
Blo17g00815 Blo-Chr17:26326885 Blo18g00825 Blo-Chr18:24351434 6.89E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g889 . . . . . . . . Cmo05g00228 . . . . . . . . Bhi04g00279 . . . Hepe10g0162 . . . . . . . . . . . . . . . . Cme03g01981 Blo17g00815 Blo18g00825 Bda08g01300 . . Bpe05g00077 Bma01g00772 Bma05g00106 . . . . Cma05g00222 Car05g00183 . Cpe11g00183 . . . . . . . . . . . . . . . Lsi08g01419 Csa02g02024 Chy03g01487 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012457 1 2 2 1 1 1 1 1 1 2 0 1 0 1 1 0 1 0 1 1 1 3 1 1 0 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00825 Blo_Chr18 FPKM 6.541143 6.337555 0.759564 0.365022 2.935759 2.317135 2.823122 2.119247 3.006097 2.499196