Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00828 ATGATGGGAGCTTCCTCTTCTTCTCCTGACCTCTCCTTAAATATCAGTCCTCCATTTTTTCCAGAAACTGAAGATAATCAAGTCTCGAGAAAACCTGTAAACTGTGATCGAAGCTCACCCACATATTCCGGTAGCAGTACCGGAAGCGATTTAAGCCATGAAAACAACTTATTTCGCTCAGAGAAGATGAGTTACAGCGTGGGTCCCAGTCAGTTGAGTTTAGGGCTTGAAATGGAGGAGCTGGGTTCTCCAACTGTTCGAACACCCAAAAACAACTACTCTCGCCGTTTTACGCAGCAACCTTTTATCGACGGCCGGGAATTCAAAAGAAGCGGCAAGATAATCAGTGGTGGAAAAAGAAGCATCAGAGCTCCGAGAATGCGATGGACCACGACTCTCCACGCTCATTTCGTACACGCGGTTCAGCTACTCGGCGGCCATGAAAGGGCGACACCAAAATCAGTGTTAGAGTTGATGAACGTGAAAGATCTAACCCTAGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGGGCACTGACAAGAACCCAGGTAATGCAAGTTTATGCCCATGGAAGGCCATTTGTTTGGATCTCAGAGGCCTGAGTCAAGAGCTGAGAGATTCGGGGTTGAACAAAAGGGCAAGGCTAGATGGTGCCAATGGGGGGATGCTTTGCCGGAAGACTAACACCCGAAGCAAGTTTGTGATCGTGTTGTGCGCTCAAGATGCAGGCGGCGGAGTGCAGCAGCTCATTGTGGTGTCCAGGCGAGATTCCCCTCAACTTAGAATTTACTCTGGGAACACCAAGCCTCCAAATGGATGA 831 48.5 MMGASSSSPDLSLNISPPFFPETEDNQVSRKPVNCDRSSPTYSGSSTGSDLSHENNLFRSEKMSYSVGPSQLSLGLEMEELGSPTVRTPKNNYSRRFTQQPFIDGREFKRSGKIISGGKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKGTDKNPGNASLCPWKAICLDLRGLSQELRDSGLNKRARLDGANGGMLCRKTNTRSKFVIVLCAQDAGGGVQQLIVVSRRDSPQLRIYSGNTKPPNG 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24386123 24387975 - BLOR09316 Blo18g00828 74132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00828 276 Pfam Myb-like DNA-binding domain 126 177 IPR001005 -
Blo18g00828 276 MobiDBLite consensus disorder prediction 32 53 - -
Blo18g00828 276 Gene3D - 124 180 - -
Blo18g00828 276 SUPERFAMILY Homeodomain-like 122 178 IPR009057 -
Blo18g00828 276 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 187 IPR044847 GO:0000976|GO:0006355|GO:0010158
Blo18g00828 276 MobiDBLite consensus disorder prediction 1 53 - -
Blo18g00828 276 MobiDBLite consensus disorder prediction 1 23 - -
Blo18g00828 276 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 6 187 - -
Blo18g00828 276 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 125 178 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00828 - - - pvy:116137755 223.787
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00936 Blo18g00828 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00936 Blo-Chr12:27534951 Blo18g00828 Blo-Chr18:24386123 5.19E-62 dispersed
Blo18g00828 Blo-Chr18:24386123 Blo19g00245 Blo-Chr19:12987645 9.28E-36 dispersed
Blo18g00828 Blo-Chr18:24386123 Blo17g00475 Blo-Chr17:6723205 1.42E-35 transposed
Blo18g00828 Blo-Chr18:24386123 Blo18g00480 Blo-Chr18:5818249 1.20E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo03g00879 . 101 260 G2-like Transcription Factor Family AT5G16560 51.5 2.3e-39 160.2
Blo18g00828 CCT 2 187 G2-like Transcription Factor Family AT5G42630 58.7 2.1e-42 169.5
Blo16g00798 . 1 444 G2-like Transcription Factor Family AT2G03500 51.4 3.2e-92 335.9
Blo01g00489 BCT,CCT 3 257 G2-like Transcription Factor Family AT1G25550 53.2 2.7e-60 229.2
Blo16g01054 BCT,CCT 3 255 G2-like Transcription Factor Family AT1G25550 52.5 8.0e-60 227.6
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.3 1.1e-53 207.2
Blo16g01054 BCT,CCT 3 287 G2-like Transcription Factor Family AT1G68670 51.9 3.2e-69 259.2
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT3G25790 52.8 5.7e-44 174.9
Blo01g00489 BCT,CCT 20 300 G2-like Transcription Factor Family AT1G13300 50.3 1.1e-58 224.2
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT5G05090 52.8 1.5e-71 266.5
Blo02g00231 . 204 490 G2-like Transcription Factor Family AT4G13640 57.6 2.4e-62 236.1
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT4G13640 57.4 1.2e-61 233.8
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo07g01419 . 22 216 G2-like Transcription Factor Family AT1G69580 54.0 1.0e-37 154.5
Blo04g00455 BCT,CCT 1 284 G2-like Transcription Factor Family AT1G79430 51.6 1.6e-65 246.9
Blo13g00605 BCT,CCT 19 255 G2-like Transcription Factor Family AT1G79430 54.0 1.8e-59 226.9
Blo02g00231 . 228 397 G2-like Transcription Factor Family AT1G79430 60.0 6.5e-38 155.2
Blo13g01012 . 56 306 G2-like Transcription Factor Family AT2G01060 51.2 8.1e-53 204.1
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT3G10760 62.5 4.3e-92 335.1
Blo12g00624 . 1 208 G2-like Transcription Factor Family AT2G40970 63.0 6.3e-64 241.1
Blo10g00280 BCT,CCT 82 331 G2-like Transcription Factor Family AT4G28610 51.5 2.8e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13616 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00828 Blo_Chr18 FPKM 9.970976 11.911901 6.5936 5.92211 15.175967 15.53475 18.023087 16.718607 15.646732 17.975401