Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00828 ATGATGGGAGCTTCCTCTTCTTCTCCTGACCTCTCCTTAAATATCAGTCCTCCATTTTTTCCAGAAACTGAAGATAATCAAGTCTCGAGAAAACCTGTAAACTGTGATCGAAGCTCACCCACATATTCCGGTAGCAGTACCGGAAGCGATTTAAGCCATGAAAACAACTTATTTCGCTCAGAGAAGATGAGTTACAGCGTGGGTCCCAGTCAGTTGAGTTTAGGGCTTGAAATGGAGGAGCTGGGTTCTCCAACTGTTCGAACACCCAAAAACAACTACTCTCGCCGTTTTACGCAGCAACCTTTTATCGACGGCCGGGAATTCAAAAGAAGCGGCAAGATAATCAGTGGTGGAAAAAGAAGCATCAGAGCTCCGAGAATGCGATGGACCACGACTCTCCACGCTCATTTCGTACACGCGGTTCAGCTACTCGGCGGCCATGAAAGGGCGACACCAAAATCAGTGTTAGAGTTGATGAACGTGAAAGATCTAACCCTAGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGGGCACTGACAAGAACCCAGGTAATGCAAGTTTATGCCCATGGAAGGCCATTTGTTTGGATCTCAGAGGCCTGAGTCAAGAGCTGAGAGATTCGGGGTTGAACAAAAGGGCAAGGCTAGATGGTGCCAATGGGGGGATGCTTTGCCGGAAGACTAACACCCGAAGCAAGTTTGTGATCGTGTTGTGCGCTCAAGATGCAGGCGGCGGAGTGCAGCAGCTCATTGTGGTGTCCAGGCGAGATTCCCCTCAACTTAGAATTTACTCTGGGAACACCAAGCCTCCAAATGGATGA 831 48.5 MMGASSSSPDLSLNISPPFFPETEDNQVSRKPVNCDRSSPTYSGSSTGSDLSHENNLFRSEKMSYSVGPSQLSLGLEMEELGSPTVRTPKNNYSRRFTQQPFIDGREFKRSGKIISGGKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKGTDKNPGNASLCPWKAICLDLRGLSQELRDSGLNKRARLDGANGGMLCRKTNTRSKFVIVLCAQDAGGGVQQLIVVSRRDSPQLRIYSGNTKPPNG 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24386123 24387975 - BLOR09316 Blo18g00828 74132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00828 276 Pfam Myb-like DNA-binding domain 126 177 IPR001005 -
Blo18g00828 276 MobiDBLite consensus disorder prediction 32 53 - -
Blo18g00828 276 Gene3D - 124 180 - -
Blo18g00828 276 SUPERFAMILY Homeodomain-like 122 178 IPR009057 -
Blo18g00828 276 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 187 IPR044847 GO:0000976|GO:0006355|GO:0010158
Blo18g00828 276 MobiDBLite consensus disorder prediction 1 53 - -
Blo18g00828 276 MobiDBLite consensus disorder prediction 1 23 - -
Blo18g00828 276 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 6 187 - -
Blo18g00828 276 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 125 178 IPR006447 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g00936 Blo18g00828 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00936 Blo-Chr12:27534951 Blo18g00828 Blo-Chr18:24386123 5.19E-62 dispersed
Blo18g00828 Blo-Chr18:24386123 Blo19g00245 Blo-Chr19:12987645 9.28E-36 dispersed
Blo18g00828 Blo-Chr18:24386123 Blo17g00475 Blo-Chr17:6723205 1.42E-35 transposed
Blo18g00828 Blo-Chr18:24386123 Blo18g00480 Blo-Chr18:5818249 1.20E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13616 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00828 - - pvy:116137755 223.787