Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00830 ATGAACCCGGCGCGTTATCTTGCTCGACTTCACAAATTGGCTCCTTTTTATTTCCCAACTTTCCTATCCTTCTCCTCCTCTTCTTCCGCAAATCCTGAATTGCCCCATCATTCCTTCGAAAATGCGAAAAAACGCAGAGAGAAATTCACCAAGGCCATGAAATTTTTTTGGAAGTCGGTCAGTTTTGTTGGCCTAGTGGAAGGGCCGCTTAAAGTTCAAAAGATTGATGATCATAAACTTCGGGTTTCGACATTTCTCAGAGTCAGACCCTCCTCTGAACCCACTACCGAATTTAGGGTTTTACTGAACATGTGGGACGAGATGGCTGAATCATGTCTTGGGCGTCTTAGACCATATGATTTAATCTATGTAGAAGGTCCTTTGCAATCTTATAAAATGACTGACCTGAATGGGGGCTCTAAGTTACGCTACCAGATTACAGCGAAGAAGTTGAATCACGTAGAACATGGTCCGGAATCAAGAAACCAAAGTAGCAAAGATGTAGAATCTGAAGACGGTATATTCTCATTGTTGGAGAGACAAAAAGATCGCCTGCACTTGTGGCACGTGTTCTTCAGCAGCCCGGATGAATGGGATGATCGCAGAAAAACTAAGGTTAATCCAAGTCAGCCGGATTTCAAGCACAAGGATGCTGGGGAAGCTCTTTGGTTGAATCCAGACGATCCTCCCTGGATAATGAAGCAACTCCATATACTTGACGCACGAAGGACTGAAGAAAACATGTTCACACATGGCAGTTCACAGCCACATTGTTCCTTCTCCAAATGGTTGTAA 795 43.9 MNPARYLARLHKLAPFYFPTFLSFSSSSSANPELPHHSFENAKKRREKFTKAMKFFWKSVSFVGLVEGPLKVQKIDDHKLRVSTFLRVRPSSEPTTEFRVLLNMWDEMAESCLGRLRPYDLIYVEGPLQSYKMTDLNGGSKLRYQITAKKLNHVEHGPESRNQSSKDVESEDGIFSLLERQKDRLHLWHVFFSSPDEWDDRRKTKVNPSQPDFKHKDAGEALWLNPDDPPWIMKQLHILDARRTEENMFTHGSSQPHCSFSKWL 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24476505 24478847 - BLOR09318 Blo18g00830 74134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00830 264 Gene3D - 58 153 IPR012340 -
Blo18g00830 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN 12 255 IPR011344 GO:0003697|GO:0006260
Blo18g00830 264 ProSiteProfiles Single-strand binding (SSB) domain profile. 56 155 IPR000424 GO:0003697
Blo18g00830 264 PANTHER PROTEIN OSB1, MITOCHONDRIAL 12 255 - -
Blo18g00830 264 SUPERFAMILY Nucleic acid-binding proteins 57 169 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00830 - - - cmax:111496022 192.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00432 Blo-Chr6:24753144 Blo18g00830 Blo-Chr18:24476505 4.16E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0169 . . . . . Blo18g00830 . . Bpe02g01677 . Bma01g00777 . . . . . . . . . . . . . . . . . . . . . . . . . Csa02g02002 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012845 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00830 Blo_Chr18 FPKM 21.628048 22.334103 19.472942 18.755352 19.629501 21.027607 19.240768 26.473543 30.063223 28.173241