Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00835 ATGGGTGAGATTGAACCCACCGCCGCTCAGCTCGGAATCGATCTCTCCCAAATCGATCTTGACTCCATTCGCCTCCCTCCAGGGGAAGACTTTGGGATCATTAGTGATGATGAAGATGTTTTGCAATCGGAGAATCTGGAGTTTGATACTGGATTTGGAAACATTATTGTTGTGGATAATCTTCCTGTTGTTCCCCGGGAAAAATTTGAGAAGCTTGAAGGTGTAATTCGCAAGATCTACGGTCAAATTGGAATAATAAAGGAGGAGGGTCTTTGGATGCCTGTTGATCCTGTGACCCACAAAACTTTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGGAAGCTGAGCTTGCTAAGGAGAAAACAAATGGATACAAACTGGACAGAGCACACATATTTGCTGTTAGCATGTTCGAGGATTTTGATAAGTTTATGAAGGTTCCTGATGAGTGGGCCACTCCTGAAATTGTTCCATACTCTCCAGGGGAGAATCTTCAAAGTTGGCTTACAGATGAGAAAGCTCGCGATCAGTTTGTGATTCGTGCTGGTAATGATACTGAAGTTTTATGGAATGATGCCAGACATATGAAGCCTGACCCTGTGTACAAGCGTACATTCTGGACTGAAGGTTTTATCCAGTGGTCATCTCTTGGGACTTACTTGGCAACAGTTCACCGCCAAGGTGCTGCTGTTTGGGGTGGTGCCAGTACCTTTAATCGTTTAATGCGATATGCTCATCCTCAGGTTAAACTGATTGATTTTTCACCTGGTGAGAAATATTTAGTAACTTACAGCAGCCATGAACCAAGCAATCCTCGAGATGCTAACAGGATTGTGATCAACATATTTGATGTTAGAACTGGTAAAGTAATGCGGGATTTCAAGGGAAGTCCGGATGAATTTGCTGTTGGAGGAACAGGAGCTGTTGCAGGAGTGTCTTGGCCAGTTTTTAGATGGGGTGGAAAGGATGATAAATATTTTGCCAGGATTGGAAAAAATTTAATCTCTGTCTATGAAACAGAAACTTTTTCTCTGGTTGACAAGAGGTCTTTAAAGGTTGACAATGTCGTGGATTTTAGTTGGTCTCCAACTGATCCAATTATTGCACTTTTTGTTCCTGAGCTAGGTGGCGGCAACCAACCTGCTAGGGTTAGCCTTGTTCAAATTCCTAGCAAAGAAGAAATCAGGCAGAAAATTCTTTTCAGTGTTAGTGATTGCAAAATGTATTGGCAAAGCAATGGCGATTATCTTGCTGCTAAGGTTGATCGTTACACAAAGACAAAAAAGAGCACATACACTGGATTTGAGCTTTTCCGCATCAAAGAACGTGATATTCCAAGTGAAGTTTTGGAACTTGAAAACAAGAATGATAAAATTATTGCTTTTGCTTGGGAGCCCAAGGGCCACAGATTTGCTGTTATTCATGGTGATAACCCCAGGCCAGACATAAGTTTTTATTCAATGCGATCTGCTCACAATACTGGTCGTGTTTCGAAGCTCACCACTCTCAAAGGGAAACAAGCAAATGCTCTCTTCTGGTCACCAGCCGGCCGATTTATTATTCTTGCTGGACTGAAGGGTTTCAATGGACAGCTTGAGTTTTATAATGTTGATGAGCTTGAAACCATGGCTACAGCTGAGCATTTCATGGCGACAGACATTGAATGGGATCCCACTGGAAGGTGGTATGTTGCAACTTCTGTGACTTCTGTTCATGAGATGGAGAATGGTTTCAACATATGGTCTTTTAATGGGAAGCTACTGTATAGAATATTGAAGGATCATTTCTATCAGTTCGTGTGGCGGCCAAGGCCAGCAACGTTGTTATCACCTGAGAAAGAAGAGGAGATAGCTAAAAATTTGAAGAAGTACAGTAAGAAGTACGAGGCAGAAGATCAAGACGTGTCAATGCTATTAAGCGAGCAGGATCGGGAGAAACGAAAGGCGTTGAAGGATGAATGGGATAAATGGGTGAGTGAGTGGAGGAGGGTGCATGAAGAAGAAAGAGTGTGGAGGCAGACACTAAGGGATGGTGAAGGCAGTGATGAAGAAGAAGAAGAATATGAAGCCAAAGAGGTTGAAGTTGAGGAGATTCTTGATATTGTGGAGGTGGTCGTTGATCTTGAAGAGTAA 2136 42.6 MGEIEPTAAQLGIDLSQIDLDSIRLPPGEDFGIISDDEDVLQSENLEFDTGFGNIIVVDNLPVVPREKFEKLEGVIRKIYGQIGIIKEEGLWMPVDPVTHKTLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVSMFEDFDKFMKVPDEWATPEIVPYSPGENLQSWLTDEKARDQFVIRAGNDTEVLWNDARHMKPDPVYKRTFWTEGFIQWSSLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDEFAVGGTGAVAGVSWPVFRWGGKDDKYFARIGKNLISVYETETFSLVDKRSLKVDNVVDFSWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEEIRQKILFSVSDCKMYWQSNGDYLAAKVDRYTKTKKSTYTGFELFRIKERDIPSEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSAHNTGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRWYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFYQFVWRPRPATLLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKALKDEWDKWVSEWRRVHEEERVWRQTLRDGEGSDEEEEEYEAKEVEVEEILDIVEVVVDLEE 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24633941 24638918 + BLOR09323 Blo18g00835 74139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00835 711 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 141 IPR000504 GO:0003723
Blo18g00835 711 Gene3D - 176 374 IPR015943 GO:0005515
Blo18g00835 711 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 3 708 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Blo18g00835 711 SUPERFAMILY RNA-binding domain, RBD 45 134 IPR035979 GO:0003676
Blo18g00835 711 CDD RRM_eIF3B 53 136 IPR034363 -
Blo18g00835 711 SMART rrm1_1 55 136 IPR000504 GO:0003723
Blo18g00835 711 PIRSF Transl_init_eIF3b 2 708 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Blo18g00835 711 Gene3D - 49 148 IPR012677 -
Blo18g00835 711 Pfam Eukaryotic translation initiation factor eIF2A 399 600 IPR013979 -
Blo18g00835 711 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 130 IPR000504 GO:0003723
Blo18g00835 711 PANTHER BNACNNG51870D PROTEIN 3 708 - -
Blo18g00835 711 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 708 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Blo18g00835 711 SUPERFAMILY DPP6 N-terminal domain-like 213 589 - -
Blo18g00835 711 Gene3D - 375 605 IPR015943 GO:0005515
Blo18g00835 711 Coils Coil 682 702 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00189 Blo-Chr2:1696241 Blo18g00835 Blo-Chr18:24633941 3.57E-15 dispersed
Blo18g00005 Blo-Chr18:82977 Blo18g00835 Blo-Chr18:24633941 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00835 K03253 - csv:101213144 1237.25