Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00123 ATGGCTCAAGAGCATCTCTGGCTCTTTCAGGTTGCGCCTTTTGGAATGTCTTTCAAGAACAGGGGCCGAACGAAAGATCAGAGCTTTAAGGAAAGAACTCTCGACTGTGGGTGGGCTTTCTTCCTCTTTTTTTCCTCAGTTGACAGATTTGACATCATCTCAGCTCTGCCTTTCCAAGTTTGTGGGGATCCTCACTTTTGCATGGCTGAAATCAAGAGCTTCGACGGATGGAAGCCTTTTGCTGTTATGGTGGCGATCGACTTTGCTTTCGCCGCCGTGAATATTCTTCTCAAAAAAACTCTCGACGGGGGGATTAACCATTTGGTTCTCATCACATATCGACTCTTGATTTCGACGATGTTCTTAGCACCAATCGCCTACTTTCGGGAAAGGGAAAGTAGAGAGAAACTAACTCTTCAGATCGTTTGCTACCTCTTCTTCAGCGCAATTGTCGGGCGAGTTTCGAATTTGGCATCATTGACTCAATATTGCTTCCTTCTAGGAATTGAATACACTTCGGCTACATTCGCTTGTGCGTTCGTGAACATAGTTCCGGTCGTCACATTCGTAATGGCCTTGCCATTAGGATTGGAGAAGGTGAACATAAAGAGCAACGGCGGGAGGGCCAAAGTAGTAGGCACGGGCGTGTGCATATGCGGCGCGGCCATGCTGATGCTTTACGTAGGGCCGCCTTTATTCAACAGGGCGCAGTCAGAGGAAGTAAGCCAAGCGATGCCGCAAAATCACGCCACCAAAAAATCAGAGAGATGGACGGTAGGCTCGGTGGCGCTGGTTATCGGAACCCTTTTGTGGTCGTCGTGGTTTCTCCTCCAATCCACCATCGGCCGGAGGTATCCCTTCCAGTACTCCAGCACCGCCCTCATGTCCTTCTTCGGCTCCATTCAGTCCGCCGTGTTGAGCTTCTCCACCGGCGCCACTCTCTCCTCATGGGCTCTCAAGGGAAGATTTGAAGTCGCCACCATCCTTTTCGCTGGTATGGTAGGGTCTGGATTGTGCTTCGTGGGAATGTCATGGTGTGTGAAGAAGAGGGGTCCTGTCTTCACATCGGCATTCAGTCCACTGGTTCAGATAACGGCGGCCATGTTCGACATCCCCATCCTCCATGAACAGTTCCATCTCGGAAGTTTATTGGGGTCAATAGTTGTGATCATGGGATTATACATTCTTCTGTGGGGGAAGAAAACAGAGATGCCAACTTGCTTGATGCAGATGGAGCAAGCAAGCCAAGAGGCCAAGGATAAGGAGGCCCAGCTGCAGCTGCAAGCCATCAATGCGGCCCGCAATTCAACTTAG 1314 50.23 MAQEHLWLFQVAPFGMSFKNRGRTKDQSFKERTLDCGWAFFLFFSSVDRFDIISALPFQVCGDPHFCMAEIKSFDGWKPFAVMVAIDFAFAAVNILLKKTLDGGINHLVLITYRLLISTMFLAPIAYFRERESREKLTLQIVCYLFFSAIVGRVSNLASLTQYCFLLGIEYTSATFACAFVNIVPVVTFVMALPLGLEKVNIKSNGGRAKVVGTGVCICGAAMLMLYVGPPLFNRAQSEEVSQAMPQNHATKKSERWTVGSVALVIGTLLWSSWFLLQSTIGRRYPFQYSSTALMSFFGSIQSAVLSFSTGATLSSWALKGRFEVATILFAGMVGSGLCFVGMSWCVKKRGPVFTSAFSPLVQITAAMFDIPILHEQFHLGSLLGSIVVIMGLYILLWGKKTEMPTCLMQMEQASQEAKDKEAQLQLQAINAARNST 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3494637 3499068 + BLOR09466 Blo19g00123 74264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00123 437 Pfam EamA-like transporter family 88 225 IPR000620 GO:0016020|GO:0016021
Blo19g00123 437 Pfam EamA-like transporter family 260 397 IPR000620 GO:0016020|GO:0016021
Blo19g00123 437 SUPERFAMILY Multidrug resistance efflux transporter EmrE 321 401 - -
Blo19g00123 437 Coils Coil 408 431 - -
Blo19g00123 437 PANTHER WAT1-RELATED PROTEIN 79 419 - -
Blo19g00123 437 SUPERFAMILY Multidrug resistance efflux transporter EmrE 113 226 - -
Blo19g00123 437 PANTHER WAT1-RELATED PROTEIN 79 419 IPR030184 GO:0016021|GO:0022857
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00123 - - - jre:108992445 506.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00218 Blo-Chr11:1762988 Blo19g00123 Blo-Chr19:3494637 3.02E-128 dispersed
Blo19g00123 Blo-Chr19:3494637 Blo13g00658 Blo-Chr13:29303869 5.06E-65 dispersed
Blo19g00123 Blo-Chr19:3494637 Blo01g01580 Blo-Chr1:55602734 1.41E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g292 . . . . . . . . . . . . . Car15g01210 . . . . . . . . . . . . . . . . . Cone8ag0576 . . . . . . . . Blo19g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002262 1 2 2 2 2 2 3 2 2 2 1 2 2 2 2 3 2 2 2 2 2 2 1 2 1 3 3 2 1 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo19g00123 Blo_Chr19 FPKM 4.837662 5.340523 5.556296 5.352314 3.403538 3.389102 4.665149 6.535204 5.798505 6.681336