Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00136 ATGATCAGTGACCATGATCATTGCCCAACCTGGAAAATTTATGAAAACCCGTTTTATAATCCTCAGTTCAAACAGCATAGACCACAAATTGGCAAGAATTTCTGTAGTTCCTCTCCTACTCTCTGGGATCTGAATCTGTTCTCATCTGCCATGGAGTCCGAACTTGAATTCGCCCGAGCCCAGATCCTGGATTTGAGATCCGAGCTTGAGTACGAACGCAAGGCGAGGAAAAAAATGGAGGCGATGAACAAGAAGTTGACAAAAGAACTGAACGAAGAGAGAAGGGGGAGAGAGGCAGTGGAGAGGGTGTGCGAGCAGCTCGCCGGAGAAATCTCATCGGGAAGATCAGAGATAGAGAGAATGAAGAAGGAGATGGAGGAGGAAAGGAAAATGCTGAAATTGGCGGAAGTGATCCGAGAGGAAAGAGTTCAAATGAAGCTTACTGAAGCGAAGCTTTTCTTCGAAGAACAACTGTCGGAAATGACGGATCTCTCCAAAACAACCACCTCGAACGAGAAAGAAAACGAGTTTTCTGCCCAGTTCAAACGTTTACTCGTTTTCGGCGACGATTATGCTGTATTTGATTCTTCAAAACAATCAGCATGCGCAGAAGAACTCGACACTTCCACTGATCAGTCGAGAAGAATGATTTTCAGCGAGAAACAGGGTTGGAACGACAACAGCAATTCGGGCTTCCGAATGACGGCGGGCGTTCAACGGCGAGCGTCGCCGGAGCCGGAGAATCCTCACATAAAGAGAGGGATCAAAGGGTTTGTGGAATTTCCGAGGGTAATTCGAGGGGTGGGGTCAAAAAGTAAACTTTGTGGAAGTAAGCTAGAATGCCAGAAGGCTCAGCTCAGGATTCTACTGAAGCCGAAAAGCCCAATCCCATTCAATAATTTTACTGTCAGTTAA 915 46.34 MISDHDHCPTWKIYENPFYNPQFKQHRPQIGKNFCSSSPTLWDLNLFSSAMESELEFARAQILDLRSELEYERKARKKMEAMNKKLTKELNEERRGREAVERVCEQLAGEISSGRSEIERMKKEMEEERKMLKLAEVIREERVQMKLTEAKLFFEEQLSEMTDLSKTTTSNEKENEFSAQFKRLLVFGDDYAVFDSSKQSACAEELDTSTDQSRRMIFSEKQGWNDNSNSGFRMTAGVQRRASPEPENPHIKRGIKGFVEFPRVIRGVGSKSKLCGSKLECQKAQLRILLKPKSPIPFNNFTVS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4079157 4080071 - BLOR09479 Blo19g00136 74277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00136 304 Coils Coil 48 138 - -
Blo19g00136 304 PANTHER GB|AAF24581.1 5 294 IPR043424 -
Blo19g00136 304 PANTHER PROTEIN BRANCHLESS TRICHOME 5 294 IPR040209 GO:0010091
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00136 - - - qsu:112034129 293.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00239 Blo-Chr14:2120607 Blo19g00136 Blo-Chr19:4079157 7.94E-11 dispersed
Blo19g00136 Blo-Chr19:4079157 Blo03g01451 Blo-Chr3:41144950 9.51E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g248 . . . . . . . . . . . Cma15g01316 Car02g00692 Car15g01184 . . Cpe05g00770 . . . . . . . . . . . . . . . . . . . Csa05g00162 Chy09g01335 . . Blo19g00136 . Bda09g00636 Bpe08g00904 . . . . . Cmo15g01381 . . . . . . Bhi12g00298 . . . . . Lcy12g1621 Cla01g00144 Cam01g0149 Cec01g0145 Cco01g0151 Clacu01g0144 Cmu01g0144 Cre09g2362 Lsi09g00135 . . Cme09g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011576 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo19g00136 Blo_Chr19 FPKM 14.567093 16.22365 7.695092 8.653641 5.695782 7.310854 7.187202 4.72531 5.128845 5.680582