Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00150 ATGACGGAAGTGGTGAGTTCAGTGGTGCACGAGGTGCTCGGACGCAGACTTCAGGATGTCGATGAACCTATTGTCGATTACATCATCAATGTTCTGGCAGACGACGATTTTGATTTCGGCATCGATGGGGAAGGCGCTATCGACGCCATTGGTGAGCTTCTTGTCAGTGCCGGCTGCGTTAGCGATTTCTCCGAATGCCGCTCGGTATGTAGCAAGTTATCTGAGAAGTTTGGAAAGCATGGATTAGTCGAAACGAAACCAGCTGTTAGAAGTTTAGCGACGCCATTGAGAATGAATGATGGAATGGATGAGGAAGAAGCTCCAAAGAAGAAGCCTGAAGTAATTGATGGCCCTCTGTTATCAGAGCGTGACAGAGCAAAGCTAGATAGAAGAAAGAGGAAGGAAGAGCGTCAAAGAGAGGCAGAATATCAGATGCATTTAGCTGAAATGGAAGCAACTAGAGCAGGAATGCCTGTAGTTTGTGTAAATCATGATAGTGGGGGTGGACCTAACGTTAAGGATATCCATATGGAAAATTTCACTGTTTCTGTTGGTGGTCGAGATTTAATTGTAGATGGCACAGTCACACTGTCGTTTGGAAGGCATTATGGTCTTGTTGGAAGAAACGGTACAGGAAAAACCACTTTCCTTAGATACATGGCTATGCATGCCATTAATGGTATTCCTAATAACTGCCAAATATTACATGTGGAACAAGAAGTAGCTGGTGATAATACATCAGCCTTGCAGTGTGTTCTAAACTCCGATGTTGAAAGAACGCAACTTTTAGAAGAAGAAGCTCGCCTGTTGTCTGAACAGAGAGAGCAGGAGTTTCAGGAAGAGAAGAGCAATGGGGAAATTGATAAAGGTGGTATTGCACAAAGGTTGGAAGAGATATACAAAAGACTTGAGTTTATTGATGCTTATTCTGCTGAAGCTCGTGCAGCTTCCATTCTTGCGGGGTTAAGTTTCTCACCAGAGATGCAACGGAAGGCAACCAAAACCTTTTCTGGTGGTTGGCGAATGCGAATAGCTCTTGCCCGTGCACTTTTTGTAGAGCCTGATTTATTGCTACTAGATGAACCCACTAACCATCTTGATCTTCATGCTGTTTTATGGTTGGAATCTTACCTTGTGAAATGGCCAAAAACATTTATTGTTGTCTCACATGCTAGAGAGTTTTTGAATACAGTAGTCACAGATATTCTTCATTTGCATGGTGAAAAATTAACAGCATTTAAAGGTAACTATGATACGTTTGAGAGGACACGAGAAGAGCAACTTAAAAATCAGCAGAAAGCGTTTGAAGCAAATGAACGTGTGCGATCTCATATGCAGACCTTTATCGATAAGTTTCGCTACAATGCAAAGAGGGCAGCTCTTGTTCAATCAAGGATCAAGGCATTGGAACGGATGGGTCATGTAGATGAAGTAGTGAATGACCCTGACTACAAATTTGAATTTCCTACTCCAGATGATAGACCTGGTCCACCAATAATAAGTTTCAGTGACGCATCTTTTGCATATCCTGGTGGCCCAACGTTGTTTAAGAATCTGAATTTTGGAATTGATCTTGACAGTCGCATTGCAATGGTTGGCCCAAATGGCATTGGTAAATCCACCATACTGAAATTAATTTCTGGGGAACTACAACCAAGTTCTGGGACTGTCTTTCGCTCAGCCAAGGTTCGAATCGCTGTATTTAGTCAACATCACGTAGATGGTCTAGATTTATCTTCAAATCCCCTTCTGTACATGATGCGCTGTTATCCAGGAGTTCCTGATCAGAAGCTCCGAGCTCACTTGGGTTCATTAGGTGTAACTGGAAATCTCGCTCTTCAGCCAATGTACACGTTGTCTGGTGGGCAGAAAAGCAGAGTTGCTTTTGCAAAGATTACCTTCAAGAAGCCACACATAATATTGCTTGATGAGCCATCTAACCATCTGGATTTGGACGCGGTGGAGGCTTTAATCCAGGGTCTTGTTGTGTTTCAAGGAGGCATTCTGATGGTCAGTCACGACGAGCATCTGATATCAGGAAGTGTGGAGGAGCTGTGGGCAGTGTCACAAGGAAAAGTGACTCCATTCCACGGAACTTTCCAGGACTACAAAAGGATTCTTCAATCCGCATAG 2133 43.32 MTEVVSSVVHEVLGRRLQDVDEPIVDYIINVLADDDFDFGIDGEGAIDAIGELLVSAGCVSDFSECRSVCSKLSEKFGKHGLVETKPAVRSLATPLRMNDGMDEEEAPKKKPEVIDGPLLSERDRAKLDRRKRKEERQREAEYQMHLAEMEATRAGMPVVCVNHDSGGGPNVKDIHMENFTVSVGGRDLIVDGTVTLSFGRHYGLVGRNGTGKTTFLRYMAMHAINGIPNNCQILHVEQEVAGDNTSALQCVLNSDVERTQLLEEEARLLSEQREQEFQEEKSNGEIDKGGIAQRLEEIYKRLEFIDAYSAEARAASILAGLSFSPEMQRKATKTFSGGWRMRIALARALFVEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDILHLHGEKLTAFKGNYDTFERTREEQLKNQQKAFEANERVRSHMQTFIDKFRYNAKRAALVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFAYPGGPTLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPDQKLRAHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVVFQGGILMVSHDEHLISGSVEELWAVSQGKVTPFHGTFQDYKRILQSA 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5793683 5810608 + BLOR09493 Blo19g00150 74291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00150 710 ProSitePatterns ABC transporters family signature. 336 350 IPR017871 GO:0005524
Blo19g00150 710 MobiDBLite consensus disorder prediction 93 139 - -
Blo19g00150 710 PANTHER NON-TRANSPORTER ABC PROTEIN 121 708 - -
Blo19g00150 710 MobiDBLite consensus disorder prediction 99 139 - -
Blo19g00150 710 Pfam ABC transporter 517 647 IPR003439 GO:0005524
Blo19g00150 710 CDD ABCF_EF-3 500 692 - -
Blo19g00150 710 ProSitePatterns ABC transporters family signature. 619 633 IPR017871 GO:0005524
Blo19g00150 710 Pfam ABC transporter 403 483 IPR032781 -
Blo19g00150 710 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 432 IPR003439 GO:0005524
Blo19g00150 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 433 IPR027417 -
Blo19g00150 710 CDD ABCF_EF-3 175 409 - -
Blo19g00150 710 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 500 709 IPR003439 GO:0005524
Blo19g00150 710 SMART AAA_5 199 409 IPR003593 -
Blo19g00150 710 SMART AAA_5 525 692 IPR003593 -
Blo19g00150 710 Coils Coil 260 280 - -
Blo19g00150 710 Pfam ABC transporter 194 364 IPR003439 GO:0005524
Blo19g00150 710 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 121 708 - -
Blo19g00150 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 702 IPR027417 -
Blo19g00150 710 Gene3D - 150 444 IPR027417 -
Blo19g00150 710 Gene3D - 462 710 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00150 K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 - csv:101207993 1260.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00427 Blo-Chr1:4840903 Blo19g00150 Blo-Chr19:5793683 6.88E-155 dispersed
Blo08g00014 Blo-Chr8:147559 Blo19g00150 Blo-Chr19:5793683 2.76E-152 dispersed
Blo14g00195 Blo-Chr14:1644974 Blo19g00150 Blo-Chr19:5793683 2.81E-142 dispersed
Blo19g00150 Blo-Chr19:5793683 Blo03g00872 Blo-Chr3:34541574 2.70E-11 dispersed
Blo19g00150 Blo-Chr19:5793683 Blo16g01114 Blo-Chr16:39631885 1.68E-151 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo19g00150 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011577 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30