Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00157 ATGGAGGTGATGGAGACGAGTGGGAGTAAGGCTCTGAGCAGTGACGCGGTGGAGAGTATTTCGGCGAGGCTTTCATTGATTGACGACCTTTACTTTCCTCGCGCTCTCCATTCCGCCGCTACCGATTCCTCTCAACGCAAGACCATCCTAAGCGACCTCCTCCTTCGCGACGTCCCTGTTTTCTTAGAGCGCTATGGTTCACAGTTGACATTCAATGAACTCCACATTTTTGATGTACTTAAAGACAATTATGAAGTGGACTGGCACTTGAAGCATCTCAGAAGCATAATCAGTCCAACATCAGATGAGTTGCGAACAAGGTCCGTGACAGTGAAGAACAGAAGGAGGGCATATCTGAATAAACTGATATTTGAGGGTCAGTATTTCTCAGAGGATGCAATGAGGGAGAGAGAGCCTTATTTGCATCATGAGTATGTAGGAAAGTTTCAGGATCCAAGTGGCAGAAGCATGGCAAGACCAGGGGAGAGATGGTCGGAGACATTAATGCGAAGAACGGAAGAAGCAATCTTGGTTGCAAAGATAAGAGCAGAGCAACAAAAACTAGGGGTGGCTGAGAGGGATTGGATTGGTAACAATACAACCCAAGAGGAAGTAGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGATGAGGAAGAGGATGAAGAAGAAGAGGAGAAGCAGCAGAAATCAGTCGACCACAGTCGTCCTGATGCAACCAACGATGTCCAATCTGTCACAGAAGGGTCTAACCTTGGGGGCACCTTATCTGCAGAAGAAATGCAAGATCAGATGGACCAATTTACCTCCATCATGCACGAGAAGTTTCTGTTGGGAGAAGATTCTGAGCATTTAGATTATTCAAAAATAGACAATGACCAGACATTGGATGATTATTGGCAGAGAGAAGTAAATGACGATGCTGAGGAGAAGTATTTTGATGAAGGTTAG 948 45.89 MEVMETSGSKALSSDAVESISARLSLIDDLYFPRALHSAATDSSQRKTILSDLLLRDVPVFLERYGSQLTFNELHIFDVLKDNYEVDWHLKHLRSIISPTSDELRTRSVTVKNRRRAYLNKLIFEGQYFSEDAMREREPYLHHEYVGKFQDPSGRSMARPGERWSETLMRRTEEAILVAKIRAEQQKLGVAERDWIGNNTTQEEVEEEEEEEEEEDEEEDEEEEEKQQKSVDHSRPDATNDVQSVTEGSNLGGTLSAEEMQDQMDQFTSIMHEKFLLGEDSEHLDYSKIDNDQTLDDYWQREVNDDAEEKYFDEG 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6227189 6229459 + BLOR09500 Blo19g00157 74298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00157 315 MobiDBLite consensus disorder prediction 237 266 - -
Blo19g00157 315 Pfam Coiled-coil domain containing protein 97-like, C-terminal 113 314 IPR040233 -
Blo19g00157 315 Coils Coil 198 231 - -
Blo19g00157 315 MobiDBLite consensus disorder prediction 192 266 - -
Blo19g00157 315 PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 97 4 314 IPR018613 -
Blo19g00157 315 MobiDBLite consensus disorder prediction 201 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00157 - - - csv:101207927 420.624
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g569 . . . . . . Bma07g00988 . Cmo06g00847 . . . . . Sed07g1307 . . Bhi11g00092 Tan01g2115 Cmetu06g0637 . . . . . . . . . . . . . . . . . . . . Blo19g00157 . Bda09g00687 Bpe08g00873 . . . . . . Cma06g00825 . . . . . . . . . . . . . . . . . . . . Csa03g00219 Chy06g02101 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003798 11 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo19g00157 Blo_Chr19 FPKM 4.242958 4.710731 3.377244 4.063638 3.694114 3.638529 4.888146 7.326118 6.155272 6.875488