Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00168 ATGGCAAGAAACCTCGTTTTCATATGCCACGTGGCTTATGCAGGATCGAACGTACAGAATATGGTGGACCCACAAAAAGCGAAGGAAGCCGAAAAGAGGTGCGACATACCCGAATCATTCAAGTATGGCAATGGGAAGCCAATTGTTCCAATCCTTAACGACCGAACACTACCCAAGTTCTTTGAGTCAGCAAGCATGGATGAAACAGTGAATAGAAATAGTACCCGTTTGAAATTATTTTCTGGCACTGCAAATCCTGCTCTTTCTCAGGAAATCGCCTGGTACATGGGCCTTGAACTTGGAAAGATCAACATTAAAAGATTCGCAGATGGTGAAATTTATGTTCAGTTGCAAGAGAGTGTTAGGGGATGTGATGTATTTTTAGTGCAGCCCACCTGCCCTCCTGCCAATGAGAATCTTATGGAGCTTTTAGTGATGGTAGATGCCTGTCGCAGAGCATCAGCCAAAAATATTACAGTTGTAATTCCATATTTTGGATATGCGAGAGCAGATAGAAAGACTCAAGGGCGTGAATCCATTGCTGCCAAATTAGTTGCAAATCTCATCACTGAAGCGGGAGCAAATCGTGTTCTTGCTTGTGACCTTCACTCTGGCCAGTCCATGGGTTACTTTGATATTCCTGTGGATCATGTATATTGCCAGCCTGTGATTCTTGATTATTTGGCTAGCAAGTCAATATGCTCTAATGATTTGGTAGTTGTTTCTCCTGATGTTGGAGGAGTTGCAAGAGCCCGCTCGTTTGCAAAAAAGTTATCAGATGCACCTTTAGCCATTGTCGATAAAAGACGCCATGGACACAATGTTGCCGAGGTGATGAACCTCATTGGTGATGTGAAAGGAAAAGTTGCTGTCATGGTAGACGATATGATTGACACTGCTGGAACTATTGCAAAAGGAGCTGCTCTATTACATCAAGAAGGTGCCAGAGAAGTCTACGCTTGCTGTACACATGCTGTTTTCAGCCCTCCGGCGATCGAGAGGTTATCGAGCGGCTTGTTTCAAGAGGTGATAATCACAAACACGATACCAGTCACGGAGAATTACTTCCCTCAGTTGACTGTTCTTTCGGTAGCAAATCTGCTGGGCGAGACAATTTGGCGGGTGCACGACGATTCTTCTATCAAGAAGCAGCTTACCATACTACAACTTACAGGTCGAAGATGGAGTCTTGTTTTTGCAGGCGCTAGCCAGTTTGAGGTGAGCAATGGTAACGAACAGTACTCTGTCGATTTGGATAAGCGTAGTTGTAACTGTTATCGATGGGAGTTGACTGACATCCCGTGTGTGCATACGTTGTTGGAGAGGCTACTGGAGAGGTTGTTGGAGAGGATGTTGGAGGGGATGCTTAAGAGGCTACTGGAGAGAATGCTAGAAGGACTGCTTGTGACCTCTTTGCTCGGTCCTCCATTCTTGGCATTTGGTGCAATACCATTTAATGGCGCTCCTCTGCTCGGTCCTCCATTCTTTGCATTTGATGGTGCTCCTCCATCCTTTGAACTCGGTCCAACACCATTTGATACTGCTCTGCCGCTTGTTCCTCCATTCTTTGCATCCATCCGACAATCTCCTCAGGATGATTACTACAGCAAAGCGAAGGAAGAAGGTTGGTGTGCTCGAAGTGCATTTAAGGTTCTTCAGATAGATGAGGAATTCGTTATTCTTGAAGGTTTGGTCTAG 1698 45.17 MARNLVFICHVAYAGSNVQNMVDPQKAKEAEKRCDIPESFKYGNGKPIVPILNDRTLPKFFESASMDETVNRNSTRLKLFSGTANPALSQEIAWYMGLELGKINIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLVMVDACRRASAKNITVVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKSICSNDLVVVSPDVGGVARARSFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFSPPAIERLSSGLFQEVIITNTIPVTENYFPQLTVLSVANLLGETIWRVHDDSSIKKQLTILQLTGRRWSLVFAGASQFEVSNGNEQYSVDLDKRSCNCYRWELTDIPCVHTLLERLLERLLERMLEGMLKRLLERMLEGLLVTSLLGPPFLAFGAIPFNGAPLLGPPFFAFDGAPPSFELGPTPFDTALPLVPPFFASIRQSPQDDYYSKAKEEGWCARSAFKVLQIDEEFVILEGLV 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6726321 6744442 - BLOR09511 Blo19g00168 74309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00168 565 SMART Pribosyltran_N_2 77 193 - -
Blo19g00168 565 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 201 216 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Blo19g00168 565 ProSiteProfiles Zinc finger SWIM-type profile. 414 446 IPR007527 GO:0008270
Blo19g00168 565 PANTHER RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2, CHLOROPLASTIC 40 382 - -
Blo19g00168 565 SUPERFAMILY PRTase-like 142 377 IPR029057 -
Blo19g00168 565 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 40 382 IPR005946 GO:0000287|GO:0004749|GO:0009165
Blo19g00168 565 Pfam SWIM zinc finger 412 439 IPR007527 GO:0008270
Blo19g00168 565 Gene3D - 80 377 IPR029057 -
Blo19g00168 565 CDD PRTases_typeI 236 348 IPR000836 -
Blo19g00168 565 TIGRFAM ribP_PPkin: ribose-phosphate diphosphokinase 78 383 IPR005946 GO:0000287|GO:0004749|GO:0009165
Blo19g00168 565 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 77 193 IPR029099 -
Blo19g00168 565 Pfam Phosphoribosyl synthetase-associated domain 278 381 IPR005946 GO:0000287|GO:0004749|GO:0009165
Blo19g00168 565 Gene3D - 220 362 IPR029057 -
Blo19g00168 565 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 77 386 IPR037515 GO:0004749
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00168 K00948 PRPS, prsA; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] - tcc:18606090 648.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01148 Blo-Chr7:31327882 Blo19g00168 Blo-Chr19:6726321 1.21E-09 dispersed
Blo11g01056 Blo-Chr11:29021573 Blo19g00168 Blo-Chr19:6726321 4.73E-13 dispersed
Blo19g00168 Blo-Chr19:6726321 Blo06g00096 Blo-Chr6:3861669 5.78E-25 dispersed
Blo19g00168 Blo-Chr19:6726321 Blo03g00828 Blo-Chr3:33890986 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g603 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo19g00168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001598 1 2 2 2 2 2 5 2 2 2 2 2 4 2 2 4 2 4 2 2 1 3 2 1 2 2 2 5 3 2 71