Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00189 ATGACGGACTATCGATTAGCAACGACGGCTATGAATCTTTGGAGTGACGAGAATGCTTCGGTCATGGATGCCTTCCTGAATTCTGAACTTTCTTCTTTCTGGGCTCCGCCGCCTCAAAACCACCCTTCCTCCGCCTCCACGTCTGCTCCTCTCTCGCAGCCGACGGCTGCGGTTTTCAATCAGGAGAGTTTGCAGCAGCGTCTGCAGGCGCTGATCGAGGGACCTCGCCATATCTGGACTTACGCAATCTTCTGGCAGTCCTCTTATGATTACTCCGGTTCATCAGTTTTAGGGTGGGGCGATGGCTATTACAAAGGGGAGGAAGATAAAGGCACGGCCAAAAGCATTACAGCTTCATCTGCGGCAGACCAGGAGCACCGGAGAAAGATTCTCCGCGAGCTCAACTCACTGATTTCAGGATCCACCGTCGCTTCAGACGACGCCGTCGATGAAGTTGTCACTGACACCGAGTGGTTCTTCTTGGTTTCGATGACTCAGTCTTTCCTCGGCGGCAGTGGGTTGCCCGGTCAGGCCTTGTTCAATTCCCGGCCGGTGTGGATTTCTGGGTCGGACCGACTCGTGGTGTCTACCTGCGAACGGGCACAGCAAGCTCAGATCTACGGGTTACAGACGATGGTATGTATACCCACTGCTAATGGAGTAGTTGAATTAGGATCGACGGAGGTCGTCTTACAGAGCTCCGATCTGATGAATAAAGTTAGGGTTTTGTTCGATTTCAATAATCTGGAGGTTGGTTCATGGCCCATGGCCGGAACTGACCATGCCGAAACAGACCCATCTGCACTCTGGCTGACTGACCCTTCCGAAATCAAAGAACCAGCGAGCTCTATTCCACCGTCAATGGCCCCTTCTTCAACTTCCCATCAAGCTTCAAAGCCAGTCCACTTCGATAATCCAAGGCCGACAAGTGTAACGGACATTCCAACAAATCAGCAATCAACACAAATGCAGACGCAAACCTTCTTCTCCAAAGAACTTAATTTCTCCAACTACGGATGCGAAGTAAGCAGCGCCAAGAACGGAAATTCCCATCTGATGAAGCCAGAATCGGGCGACATTCTTAACTTCGGAGAGAGCAAAAAAAGTTCTTTCTGGAACGGGAGCTTGTTTTCCGGCCATTCTCAGGTTGTTACCGAGGAGCACGTAAACAAGAAGAGGTCGCCGGCTTCCCGAGGAAGTAACGAAGATGGGATTATGTCTTTTACTTCCGGCGTGATTCTGCCGTCTTCCGGTGGAGTGAAGTCAAGCGGCGGTGGAGTGGATTCCGACAATTCCGATCTCGAAGCTTCAGTAGTTCGCGAGGCAGACAGTAGCAGAGTGGTGGAACCGGAGAAGAAGCCTCGGAAAAGAGGAAGAAAACCAGCAAACGGAAGAGAAGAGCCATTAAATCACGTTGAAGCAGAGAGACAGAGAAGAGAGAAGCTAAACCAGAGATTCTACGCTCTCAGAGCTGTAGTTCCAAACGTGTCGAAAATGGACAAAGCTTCCCTTCTTGGCGACGCTATCTCCTACATCAACGAGCTCAAATCGAAACTTCAGACTACAGAATCAGATAAGGAAGAGTTGCAGACACAATTAGATTCAGTGAAAAAGGATTTGGCCAACAAAGACAGTCGTTATTCAGGGTCAAAACAGTCTCCGCCTAATCAAGATCTGATGATCTCAAATCAAAACGGAGGTAAACTCACAGAAATGGACATTGATGTGAAAATAATCGGGTGGGATGCGATGATCCGAATCCAATGCAGTAAGGAAAACCACCCAGCAGCTGCATTAACGGCGGCACTGAAGGAACTAGACTTGGAAGTTAACCACGCCAGCATGTCGGTGGTGAAAAACCTGATGATCCAACAAGCTACAGTGAAGATGGGGAGTAAATTTTACCCTCAAGAACAGCTCAAGATCGCTCTGTCAACAAAATTAATCAACACCCGATGA 1959 49.21 MTDYRLATTAMNLWSDENASVMDAFLNSELSSFWAPPPQNHPSSASTSAPLSQPTAAVFNQESLQQRLQALIEGPRHIWTYAIFWQSSYDYSGSSVLGWGDGYYKGEEDKGTAKSITASSAADQEHRRKILRELNSLISGSTVASDDAVDEVVTDTEWFFLVSMTQSFLGGSGLPGQALFNSRPVWISGSDRLVVSTCERAQQAQIYGLQTMVCIPTANGVVELGSTEVVLQSSDLMNKVRVLFDFNNLEVGSWPMAGTDHAETDPSALWLTDPSEIKEPASSIPPSMAPSSTSHQASKPVHFDNPRPTSVTDIPTNQQSTQMQTQTFFSKELNFSNYGCEVSSAKNGNSHLMKPESGDILNFGESKKSSFWNGSLFSGHSQVVTEEHVNKKRSPASRGSNEDGIMSFTSGVILPSSGGVKSSGGGVDSDNSDLEASVVREADSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQTTESDKEELQTQLDSVKKDLANKDSRYSGSKQSPPNQDLMISNQNGGKLTEMDIDVKIIGWDAMIRIQCSKENHPAAALTAALKELDLEVNHASMSVVKNLMIQQATVKMGSKFYPQEQLKIALSTKLINTR 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8412187 8414145 - BLOR09532 Blo19g00189 74330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00189 652 MobiDBLite consensus disorder prediction 285 323 - -
Blo19g00189 652 MobiDBLite consensus disorder prediction 383 476 - -
Blo19g00189 652 PANTHER MYC 40 648 IPR045084 GO:0003700|GO:0006355
Blo19g00189 652 Pfam Helix-loop-helix DNA-binding domain 470 515 IPR011598 GO:0046983
Blo19g00189 652 MobiDBLite consensus disorder prediction 400 430 - -
Blo19g00189 652 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 64 244 IPR025610 -
Blo19g00189 652 MobiDBLite consensus disorder prediction 536 564 - -
Blo19g00189 652 Coils Coil 512 546 - -
Blo19g00189 652 MobiDBLite consensus disorder prediction 434 476 - -
Blo19g00189 652 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 466 515 IPR011598 GO:0046983
Blo19g00189 652 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 469 535 IPR036638 GO:0046983
Blo19g00189 652 SMART finulus 472 521 IPR011598 GO:0046983
Blo19g00189 652 MobiDBLite consensus disorder prediction 277 323 - -
Blo19g00189 652 CDD bHLH_AtAIB_like 463 538 - -
Blo19g00189 652 PANTHER TRANSCRIPTION FACTOR MYC2 40 648 - -
Blo19g00189 652 Gene3D - 458 545 IPR036638 GO:0046983
Blo19g00189 652 MobiDBLite consensus disorder prediction 546 564 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo02g00993 Blo19g00189 CCT
Blo03g00858 Blo19g00189 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00861 Blo-Chr3:34437532 Blo19g00189 Blo-Chr19:8412187 0 dispersed
Blo16g00474 Blo-Chr16:18744818 Blo19g00189 Blo-Chr19:8412187 1.62E-31 dispersed
Blo16g00475 Blo-Chr16:18791477 Blo19g00189 Blo-Chr19:8412187 2.11E-29 dispersed
Blo19g00189 Blo-Chr19:8412187 Blo07g01023 Blo-Chr7:30023841 1.10E-14 dispersed
Blo19g00189 Blo-Chr19:8412187 Blo03g00858 Blo-Chr3:34406074 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13628 PF14215 bHLH-MYC_N 3.90E-54 CL0161 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00189 K13422 - vvi:100250607 866.685