Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00196 ATGGAAACTGCGCTCTCGAAGACTGTGTGTGTGATGGACGCTTCAGGGACACTGGGTTCGAGCCTTGTTAAACGTCTTCTCCAGAGCGGTCATACTGTTCATGCTGCTGTTCAAAGCCATGGTGAATTTATGTTTAGAGGATGTGATGAAAAGAAGCTGAAGATTTTCCATTCGGATCCCTTCGATTACCAGAGCATAATCGATGCATTGAGAGGCTGTTCTGGCCTGTTTTATGCGTTTGAGCCTCCCCAAGATTATCCGAACTATGATGAATTTATGGCAGAGGTGGAGGAGAGAGCAGCTCACAATGTAATAGAAGCATGTGCTCAAACGGCAACCATAGACAAGGTCGTTTTCACCTCTTCTATCACTGCCGTCATTTGGAGAAACGATCGCAATTCGATCGCATCAGACTTCGATGAACGGCTGTGGAGTGATGTCAATTTTTGCCGTAAATTCAAGTTATGGCATGGGCTATCAAAGACATTAGCAGAGAAGAGTGCATGGGCATTAGCCATGGACAGGGGAGTAAACCTGGTGTCCATCAATGGAGGATTACTCAAAACCTCTGATCTCACCATAGAAAACCCATATCTCAAAGGGGCGGCTGAGATGTACGAAGACGGCTTATTCGTCACCGTGGATCTAAATTTCATGGTCGACGCACACATCTGTGTTTTTCAAGACATCTCTTCGTACGGCCGATATCTTTGCTTCAACCACATCATCAACCGAAACGAAGATGCGATTGAGCTTGCCCAAAAGCTAACCCCTTCGGCCCCTTTACCTCCAAGTGACAAGGAAGATATGAGGATCATTCAACAAAGAATAAGCAATAAGAAACTCAATAAGTTAATGGTCAATTTTGAGGCTGTACCTCAACTGCAGTGA 891 45.12 METALSKTVCVMDASGTLGSSLVKRLLQSGHTVHAAVQSHGEFMFRGCDEKKLKIFHSDPFDYQSIIDALRGCSGLFYAFEPPQDYPNYDEFMAEVEERAAHNVIEACAQTATIDKVVFTSSITAVIWRNDRNSIASDFDERLWSDVNFCRKFKLWHGLSKTLAEKSAWALAMDRGVNLVSINGGLLKTSDLTIENPYLKGAAEMYEDGLFVTVDLNFMVDAHICVFQDISSYGRYLCFNHIINRNEDAIELAQKLTPSAPLPPSDKEDMRIIQQRISNKKLNKLMVNFEAVPQLQ 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8823078 8825348 - BLOR09539 Blo19g00196 74337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00196 296 Gene3D - 1 295 - -
Blo19g00196 296 Pfam NAD(P)H-binding 14 126 IPR016040 -
Blo19g00196 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 265 IPR036291 -
Blo19g00196 296 CDD FR_SDR_e 9 287 - -
Blo19g00196 296 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 6 293 - -
Blo19g00196 296 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 6 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00196 - - - qsu:112034715 454.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00870 Blo19g00196 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00455 Blo-Chr10:9118904 Blo19g00196 Blo-Chr19:8823078 5.75E-38 dispersed
Blo11g00663 Blo-Chr11:7174486 Blo19g00196 Blo-Chr19:8823078 3.32E-47 dispersed
Blo19g00196 Blo-Chr19:8823078 Blo10g00511 Blo-Chr10:11786601 1.86E-42 dispersed
Blo07g01087 Blo-Chr7:30695826 Blo19g00196 Blo-Chr19:8823078 7.17E-139 transposed
Blo19g00196 Blo-Chr19:8823078 Blo03g00870 Blo-Chr3:34521836 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g685 . . . . . . Bma07g00925 Bma14g00160 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0472 . . . . . . Blo03g00870 Blo19g00196 . Bda09g00737 Bpe08g00826 Bpe11g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002312 4 3 3 3 3 2 2 2 2 1 2 2 2 1 1 1 2 3 2 2 1 2 1 2 2 2 2 1 3 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo19g00196 Blo_Chr19 FPKM 74.702492 70.934677 43.273876 42.254082 39.376911 35.658878 41.973007 24.666361 23.859756 30.07114