Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00197 ATGACAGCACCGAAGACGAAACGAGGAGAGTCAAAGAAGGACGAACAGACAGTAGAAGTGCAGAACAGCGACTATGTCTTCTGCAATCTGCGAAGACGAAACGACGATCAGTGGAGTGGTTTAAGAGAATTGATTTTCGAGAGTGAGGAATTAAAGGCAAGGTTGGAAAAGCTGGCAGATTTGGCGGAGAGGAATGCCTATAAGGAGCTGGTGAAGGACATCACTCCTAGAAAGGAACCTGAGGAGCCTTTTTCTTCTTACAAGGATCAAATGGGATTTGGTTTACATGTTGTGTTAACAATGTTTACTGGCTATCTGGTTGGATATGCTGCTTTCCGAGCCTTGTTTAGCAACTCACCAGTCATGAATGCTGCTGGAGGGATCCTTGGATTTGTTTTCGGCATGCTTGTTGAGACACTTCTTTTCATGATTAAAACTTCTAATCACAATCTTACACCGTCAAAAACTACTTCCAAGCAAAAGAAGAATCAGTAG 495 43.03 MTAPKTKRGESKKDEQTVEVQNSDYVFCNLRRRNDDQWSGLRELIFESEELKARLEKLADLAERNAYKELVKDITPRKEPEEPFSSYKDQMGFGLHVVLTMFTGYLVGYAAFRALFSNSPVMNAAGGILGFVFGMLVETLLFMIKTSNHNLTPSKTTSKQKKNQ 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8860199 8863543 + BLOR09540 Blo19g00197 74338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00197 164 Coils Coil 41 65 - -
Blo19g00197 164 PANTHER TRANSMEMBRANE PROTEIN 199 47 158 IPR021013 GO:0070072
Blo19g00197 164 PANTHER BNAA02G10570D PROTEIN 47 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00197 - - - tss:122646910 189.889
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g686 . . . . . . Bma07g00924 . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0478 . . . . . . . . Blo19g00197 . . Bpe08g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007424 3 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo19g00197 Blo_Chr19 FPKM 17.585028 18.32198 0.814731 1.063121 1.031069 1.259771 1.191297 0.0 0.0 0.0