Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00200 ATGGCGGAGCGTAGATTCTGCGTTGGCTACGCCTTAGCGACGAAGAAGCGGCGGAGTTTCATTCAAGATTCGCTAGTTACTCTTGCGGAATCTCGAGGCGTTGATCTTGTTCGTATTGATGATGACCGACGGCTAGTCGATCAGGGACCGTTTGATTGTGTTCTCCACAAGTTGTACGGTGAGGATTGGAGGAAGCAGCTGGAGGAGTTTAGAGCTTGGAACCCTAATGTGGTGATTATAGACTCGCCGGACGCGATTGAGAAGCTTCACAATAGGATTTCGATGCTCCAAGTGGTTTCGGAGCTCAAGATTGAGAATCAGAACGAGTCTTTTGGGATTCCGAAGCAGACTGTGATTTACGATCAGGACACTCTGTTTGATCGTCAGGCTTGGGAGGGGCTAAAGTTTCCAGTGATTGCGAAGCCCTTGGTGGCTGACGGCAGCGCCAAATCACACAAAATGGCGCTTATTTTTAATCACGAAGGATTGAACAAGCTCAAGCCTCCTATAGTCTTGCAGGAATTTGTGAACCATGGAGGCGTTATTTTCAAGGTTTATGTCGTTGGAGAGCATGTGAAATGCGTCAAGAGGAAATCGCTACCAGATGTTGCTGAAGAGAAATTAGGGAGCTTAGAAGGAGCATTGTCGTTCTCGCAGATATCAAATCTTGCTACGAATGAAAGAATTGACGAAAAATACTACAAGAAGATGCATTTGGATGAGACCGAGATGCCACCTATTAACTTTCTCACTGATATAGCTAGGGGATTGCGTCATGGGATGAAATTAAATCTTTTCAACTTCGATGTTATTCGGGACTCAAAAATTGGGACTCGGTATCTCATAATTGACATCAACTATTTTCCGGGGTATGCCAAGATGCCAGGGTACGAGAAAGTTTTGACGGATTTCTTCTGTGATGTGAAGCAGAAGAAAGAAAGTGAGTCTGCTAAAGTTCTTTGTGTGAAGGATGGTTCAGAGAAGGCTTTTTTTGATCAACAAATGAGAAAAGGAGTGCAGAGTGTTGGCCATAGTGATGACAGAGAAGGTGGCTTCCGACCTTCCTCTCTTAGCAGTGAAGAGGAGACCCAATTCAAGCTTGACTGA 1107 45.08 MAERRFCVGYALATKKRRSFIQDSLVTLAESRGVDLVRIDDDRRLVDQGPFDCVLHKLYGEDWRKQLEEFRAWNPNVVIIDSPDAIEKLHNRISMLQVVSELKIENQNESFGIPKQTVIYDQDTLFDRQAWEGLKFPVIAKPLVADGSAKSHKMALIFNHEGLNKLKPPIVLQEFVNHGGVIFKVYVVGEHVKCVKRKSLPDVAEEKLGSLEGALSFSQISNLATNERIDEKYYKKMHLDETEMPPINFLTDIARGLRHGMKLNLFNFDVIRDSKIGTRYLIIDINYFPGYAKMPGYEKVLTDFFCDVKQKKESESAKVLCVKDGSEKAFFDQQMRKGVQSVGHSDDREGGFRPSSLSSEEETQFKLD 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8951809 8952915 + BLOR09543 Blo19g00200 74341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00200 368 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 106 306 IPR040464 -
Blo19g00200 368 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 2 319 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Blo19g00200 368 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 8 86 IPR041429 -
Blo19g00200 368 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 81 291 - -
Blo19g00200 368 MobiDBLite consensus disorder prediction 334 368 - -
Blo19g00200 368 PIRSF ITPK 1 319 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Blo19g00200 368 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 2 319 - -
Blo19g00200 368 MobiDBLite consensus disorder prediction 341 355 - -
Blo19g00200 368 Gene3D - 84 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00200 K00913 ITPK1; inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase [EC:2.7.1.159 2.7.1.134] - mnt:21400765 554.288
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00058 Blo19g00200 CCT
Blo03g00058 Blo19g00200 ECH
Blo03g00871 Blo19g00200 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00078 Blo-Chr17:583345 Blo19g00200 Blo-Chr19:8951809 1.16E-94 dispersed
Blo17g00143 Blo-Chr17:1321552 Blo19g00200 Blo-Chr19:8951809 5.25E-22 dispersed
Blo07g01089 Blo-Chr7:30708779 Blo19g00200 Blo-Chr19:8951809 1.06E-117 transposed
Blo19g00200 Blo-Chr19:8951809 Blo03g00871 Blo-Chr3:34539452 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g692 . Blo03g00058 . . . . Bma07g00920 Bma14g00162 . Cmo16g01222 . . . . Sed02g0062 Cpe14g00971 . Bhi11g00019 Tan01g2207 Cmetu01g2686 . . Mch10g1676 . Cla10g00145 Cam10g0140 Cec10g0150 Cco10g0150 Clacu10g0144 Cmu10g0991 Cre10g0402 . Cone5ag0619 . . Lsi07g01180 . Chy04g00110 Cme06g02458 Blo03g00871 Blo19g00200 Bda07g00088 . Bpe08g00823 Bpe11g00325 . . . . Cmo19g00239 . Cma16g01172 . Car16g01105 . Cpe15g00200 Bhi05g00470 . . Lac11g2433 . . . Cla09g01107 Cam09g1161 Cec09g1169 Cco09g1184 . . Cre09g1122 . Csa03g04592 Chy06g02155 Cme04g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001652 2 8 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 3 2 1 2 2 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo19g00200 Blo_Chr19 FPKM 43.815361 49.545967 3.015435 3.009119 14.301877 12.561053 12.843636 0.0 0.199836 0.0