Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00222 ATGGCTTCTCTCAGCTTCCTATCGGTTATTCTTATCCACATTTGCTTTTATGTGAGCTTGTGTTTTGCTGCGGATCCGTTTGTTAGCTATGATTTTGTGGTCTCTTACATCACTGCCTCTCCTTTGGGAGTACCTCAACAGGTTATTGCCATTAACGGCAAGTTTCCTGGTCCAAGTATTAATGTGACTACTAACTATAATGTAGCAGTCAATGTTAAGAACAAGTTGGACGAGAACGTCCTTCTCCATTGGTCCGGAATTCAGCAAAGGCGTAGTTGTTGGCAAGATGGTCTTCTTGGTACTAATTGTCCCATTCCTCCAAAGTGGAATTGGACATACCAATTTCAGGTGAAGGATCAAATAGGGAGTTTCTTCTACTTTCCTTCACTTAATTTTCAGAGAGCTTCTGGTGGGTATGGTGGGTTTGTTGTAAACAACAGGGAAATTATTCCCATTCCTTTTGATACCCCAGATGGTGATATCACAATTATGATCGGCGATTGGTATACTCGGAATCACACGGCTTTGAGGAAGACCCTCGATGATGGGAAAAGCCTTGGGATACCCAATGGTGTTCTTATTAATGGTAAAGGCCCTTATCGCTATAACGACACGCTTGTACCAGAAGGAATTGATCATGAAACGATTGAAGTCCACCCAGGGAAAACTTACCGAATCCGACTACACAACGTTGGAATATCAACTAGTCTAAATTTCAGGATCCAGAATCATAATCTTCTTCTGGTAGAGACAGAAGGATCATACACCGTTCAACAGGAATATACGAGCATGGATATCCACGTAGGACAATCTTATTCGTTTTTGGTAACCATGGATCAGAATGCTAGTACTGATTACTACATTGTAGCTAGTGCTAGGTTTGTGAATGAATCACTTTGGAAAAGAGTTACTGGGGTTGCCATCTTGCGATATTCCAATTCCAAAGGAAAGGCAACTGGGCCTCTCCCTCCTGCTCCAAATGATGAGTTTGACAAAACTTTCTCCATGAACCAGGCTCGATCAATCAGATGGAATGTAACAGCTAGTGGTGCGAGGCCTAATCCACAAGGCTCTTTTCGATACGGCTCGATTAATGTGACTGAAATTTACGTGTTGAAGAACAAACCAGTGATGGGTATTGATGGGAAACAGCGGACAACTCTGAGCGGGATTTCGTATGTTAATCCAGCTACACCTATCAGACTAGCTGACCAATTCAAAGTAAAAGGAGTGTACAAGCTTGACTTTCCCTCAAAACCCATCGAAGGAGCACCAAAAATGGAAACATCGGTTATTAATGGAACATACAGAGGATTCATGGAGGTTATCTTACAGAATAATGATACTAAGGTTCAGAGCTACCATATGAGTGGATATGCATTTTTTGTTGTCGGCATGGACTTTGGGGAATGGTCGGAGAATAGCCAAGGCACGTATAATAAGTGGGACGGAATAGCTCGATCAACTATTCAGGTTTATCCGGGTGCATGGACTGCAATTTTGGTCTCTCTTGACAATGTCGGTATCTGGAACCTCAGAGCAGAAAATCTCGATTCATGGTACCTCGGACAAGAGACTTATGTCCGTGTTGTTAATCCGGAAGCTACAAATAAAACCGAGTTGCCTTTACCAGACAATGCCCTCTTTTGCGGTGCACTCAGCAAGCTACAAAAGCCTCAAGACATCTCTATGGCATATTCTTTGAAGGGAAATAATTTGAAGCTGTTCTTTGCGCTGCTGCTGGGTGTCCTAATTTCCCAACTCGATAGTGGCCGGGTTAATGGTTCGGATCTAACCGGTAGACTCGGGTGCCCTAGTCTCCTAATTCGAGACACGAGTAAGAAAGATGTAACGGTAAGTAAAGAATGGTTGGGTGGATCCCTTTCCGATATAAGTAGTGATTTAAACGAGTTTATTAGTCCGGGAGCGGAAGAGGAAGCATTCCCCATGGAGGAGGCGAGTTATCCAGGGAATTAG 1977 43.2 MASLSFLSVILIHICFYVSLCFAADPFVSYDFVVSYITASPLGVPQQVIAINGKFPGPSINVTTNYNVAVNVKNKLDENVLLHWSGIQQRRSCWQDGLLGTNCPIPPKWNWTYQFQVKDQIGSFFYFPSLNFQRASGGYGGFVVNNREIIPIPFDTPDGDITIMIGDWYTRNHTALRKTLDDGKSLGIPNGVLINGKGPYRYNDTLVPEGIDHETIEVHPGKTYRIRLHNVGISTSLNFRIQNHNLLLVETEGSYTVQQEYTSMDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESLWKRVTGVAILRYSNSKGKATGPLPPAPNDEFDKTFSMNQARSIRWNVTASGARPNPQGSFRYGSINVTEIYVLKNKPVMGIDGKQRTTLSGISYVNPATPIRLADQFKVKGVYKLDFPSKPIEGAPKMETSVINGTYRGFMEVILQNNDTKVQSYHMSGYAFFVVGMDFGEWSENSQGTYNKWDGIARSTIQVYPGAWTAILVSLDNVGIWNLRAENLDSWYLGQETYVRVVNPEATNKTELPLPDNALFCGALSKLQKPQDISMAYSLKGNNLKLFFALLLGVLISQLDSGRVNGSDLTGRLGCPSLLIRDTSKKDVTVSKEWLGGSLSDISSDLNEFISPGAEEEAFPMEEASYPGN 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 11149334 11157486 - BLOR09565 Blo19g00222 74363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00222 658 Pfam Multicopper oxidase 160 313 IPR001117 -
Blo19g00222 658 Pfam Multicopper oxidase 401 533 IPR011706 GO:0005507|GO:0016491
Blo19g00222 658 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 13 562 - -
Blo19g00222 658 PANTHER MULTI-COPPER OXIDASE 13 562 IPR045087 -
Blo19g00222 658 SUPERFAMILY Cupredoxins 155 353 IPR008972 -
Blo19g00222 658 CDD CuRO_1_AAO_like_1 28 145 IPR034273 GO:0005507
Blo19g00222 658 Gene3D - 158 351 IPR008972 -
Blo19g00222 658 Gene3D - 363 561 IPR008972 -
Blo19g00222 658 SUPERFAMILY Cupredoxins 22 173 IPR008972 -
Blo19g00222 658 SUPERFAMILY Cupredoxins 380 551 IPR008972 -
Blo19g00222 658 Pfam Multicopper oxidase 34 148 IPR011707 GO:0005507
Blo19g00222 658 Gene3D - 22 146 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00222 - - - qsu:112020344 1043.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00470 Blo-Chr5:7230167 Blo19g00222 Blo-Chr19:11149334 0 dispersed
Blo06g01090 Blo-Chr6:34196944 Blo19g00222 Blo-Chr19:11149334 0 dispersed
Blo17g00723 Blo-Chr17:21645693 Blo19g00222 Blo-Chr19:11149334 0 dispersed
Blo18g00757 Blo-Chr18:20906782 Blo19g00222 Blo-Chr19:11149334 1.63E-177 dispersed
Blo19g00222 Blo-Chr19:11149334 Blo15g00133 Blo-Chr15:1205252 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g496 . . . . . . Bma07g01605 . . . . Cma15g01148 . Car15g01043 . . . . . . . . . . . . . . . . . . . . . . Csa05g00396 Chy09g01117 . . Blo19g00222 . Bda09g00089 Bpe08g01440 . . . . . Cmo15g01208 . . . . . Cpe13g00220 . . . . . . . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 Lsi09g00399 . . Cme09g01647
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000359 4 3 4 4 4 4 5 4 4 4 5 4 5 4 4 5 4 6 5 4 4 4 4 4 4 5 4 8 5 2 130
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo19g00222 Blo_Chr19 FPKM 5.731469 5.653081 9.762691 10.502748 13.205906 10.785362 13.10638 10.401202 10.924821 10.487525