Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00238 ATGATAAAGAGGTATGCTCCAATGGATAAATTGATTACTTGGATTTTTAGAGTTGGGTGGATTAAAACTTCTTATGCTAAGGACATGTTATTTGCTTGTGGCAATGTGGAAAATGTTGGCCTGGTTGAATATGATTACTATTTTGAGATTATGGAAACTTATTACATCTTGCATGAAGATATTAAATCGATTCTCTGGCAAAGCACTTATGGCAATGAGGGATACAAGTTTCTTTTGGAAGCCATAGCCATGAAGCTTGAGCTTAAGAAAGTGCATTATTTATTGAGAGTCACAATAATGGTGCTCTATCCTGCACTAAGTTTCTCTCAAGACACCTTTATCCCTTCTAGAGCCTCCTTCTACGGCAGCCCTGATTGCTATGGAACTCCAACGGGAGCTTGTGGCTTTGGTGAGTTCGGAAGAACTGTGAACGATGGGAATGTGGGTGCTGTTTCCAGGCTTTACAGAAACGGTACTGGCTGCGGTGCATGCTATCAGGTCAGGTGCAAAGTACCAAAATGCTGCAGTAACAACGGGGTGACGGTGGTGGTGACAGACTACGGCGAGGGAGATCACACGGACTTCATTTTCAGCCCCAGAGCTTTCACCAAATTGGCCAATCCAAATGCTGCAACGGAGCTGTTCTCATACGGCGTGGTGGACGTAGAATACAGAAGAGTTCCCTGCCAATACAGCGGATACAACGTGAAATTCAAGGTCCAACCACACAGCAACTTTCCAGACTACTTGGCCATTGTGATCATATATGTCTCTGGCCAGAACGATATCACAGCCGTCGAATTGTGGCAGGAGGATTGCAAGGAATGGAGGGGAATGAGGAGGGCATATGGAGGAGTGTGGGACATGGCTAACCCACCCAGAGGAGACGTCAATTTGAGTGAAAAAAGAGGTCACTCATGGACTCCTCTGGTCAATTACACGAAAGGGTGGCCACCATCACGAGCAACATCCCAAACATCCGAGATAAAGCAACGACGGTCTGTAGAGCAGGCTCGTCACCCCGAGTTTGCCAACAAGTCAAAGCTCAATGCCAACACAACCCATATTGTCACCCAAGTCCTGTTGACAAGCCAAAGCTCAGCGCCGACACAACTCAAATCACGTCCCAACTTTGCCAATGAGCTAAAGCTCAGCGCCGACAAACTCGTATCAAGGTACACCCTAATCTTGCCGACAAGCCAAAGCTCAGCGCAGACACAACTCGATTCACCTCTCGAGTTTACAGACGAGCCAAAGCTTAGTGCCGATAAACTCATATCACATCCCGAGTTTGCCGAAAAGCCAAAGCTTAGCGCTGAAAAACTCGTATCAAAGTACACCCTAATCAGGTTTAGGGATTCAAACCCAAGGAAGCGTTGTTGTAATACCCCGATAATACTTTCCCAAGGTTGCTTGATGGGTGTTGTCCTCTATTACGACTTGAACTGGTGTAGTGTTTTACTAGGTGAACTGCTACTGCAAATTGGGTTGGTTCTGCAGCTCCTATGGCATTTTGGTGTTGGCTGTGAGCTACGGTCTCTGGTATGCTTCTTGTTTGATAGCTCTTCTGTGATGTCTAAGACTTGA 1587 46.19 MIKRYAPMDKLITWIFRVGWIKTSYAKDMLFACGNVENVGLVEYDYYFEIMETYYILHEDIKSILWQSTYGNEGYKFLLEAIAMKLELKKVHYLLRVTIMVLYPALSFSQDTFIPSRASFYGSPDCYGTPTGACGFGEFGRTVNDGNVGAVSRLYRNGTGCGACYQVRCKVPKCCSNNGVTVVVTDYGEGDHTDFIFSPRAFTKLANPNAATELFSYGVVDVEYRRVPCQYSGYNVKFKVQPHSNFPDYLAIVIIYVSGQNDITAVELWQEDCKEWRGMRRAYGGVWDMANPPRGDVNLSEKRGHSWTPLVNYTKGWPPSRATSQTSEIKQRRSVEQARHPEFANKSKLNANTTHIVTQVLLTSQSSAPTQLKSRPNFANELKLSADKLVSRYTLILPTSQSSAQTQLDSPLEFTDEPKLSADKLISHPEFAEKPKLSAEKLVSKYTLIRFRDSNPRKRCCNTPIILSQGCLMGVVLYYDLNWCSVLLGELLLQIGLVLQLLWHFGVGCELRSLVCFLFDSSSVMSKT 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 12243645 12254335 + BLOR09581 Blo19g00238 74379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00238 528 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 131 234 IPR007112 -
Blo19g00238 528 PANTHER EXPANSIN-B3 94 300 - -
Blo19g00238 528 Gene3D - 230 319 IPR036749 -
Blo19g00238 528 PRINTS Expansin/Lol pI family signature 217 233 IPR007118 GO:0005576
Blo19g00238 528 PRINTS Expansin/Lol pI family signature 112 127 IPR007118 GO:0005576
Blo19g00238 528 PRINTS Expansin/Lol pI family signature 151 169 IPR007118 GO:0005576
Blo19g00238 528 PRINTS Expansin/Lol pI family signature 276 290 IPR007118 GO:0005576
Blo19g00238 528 SUPERFAMILY Barwin-like endoglucanases 101 233 IPR036908 -
Blo19g00238 528 Pfam Expansin C-terminal domain 236 297 IPR007117 -
Blo19g00238 528 MobiDBLite consensus disorder prediction 318 338 - -
Blo19g00238 528 SMART dpbb_1 148 224 IPR007112 -
Blo19g00238 528 Pfam Lytic transglycolase 152 224 IPR009009 -
Blo19g00238 528 Gene3D - 103 229 IPR036908 -
Blo19g00238 528 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 248 302 IPR007117 -
Blo19g00238 528 PANTHER EXPANSIN-LIKE B1 94 300 - -
Blo19g00238 528 SUPERFAMILY PHL pollen allergen 235 298 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01009 Blo-Chr1:30279258 Blo19g00238 Blo-Chr19:12243645 2.95E-16 dispersed
Blo03g00459 Blo-Chr3:14761283 Blo19g00238 Blo-Chr19:12243645 6.31E-60 dispersed
Blo13g00485 Blo-Chr13:25810114 Blo19g00238 Blo-Chr19:12243645 1.58E-40 dispersed
Blo17g00655 Blo-Chr17:15451685 Blo19g00238 Blo-Chr19:12243645 5.20E-51 dispersed
Blo19g00238 Blo-Chr19:12243645 Blo13g00371 Blo-Chr13:21519812 1.23E-26 dispersed
Blo19g00238 Blo-Chr19:12243645 Blo04g00598 Blo-Chr4:5134562 6.28E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00238 - - vvi:100243043 330.872