Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00240 ATGGATCCTAATGACTATGAAGATCAAATGGCTTGTAAGGTGAAGATAATGTCTATAAACAAAAACAAAGAAGGGAAATCACTCAAACGGAAGCATAGTCTTGAAAACATGGGGTTTGGAATGGTAGTTTCCAATCAAAGTCATGGTTTCCGGAAGGCAATGGATGAAGATATAAGCAATAGATCAAGCTCAGGGTCAGCAATATCTAACTCCGAGAGCTGTGCGCAATTTGGTAGTGCCGAGGCTAGTGATCTGACAGGTCCAGCTCAGTCAGTTGTTTGGGATTCAATGGTACCTTCAAAAAAGAGGACTTGTTTGGGTCAACCTAAGCAATCGTCAGTAGAAAAACTTACAAAAGATCTATATACTATTTTACATGAACAACAATCGTCCTATTTCTCAGGATCATCTGAGGAAGATTTACTTTTCGAGACTGGAAAACCTATGGTCTCTGTTGAGATAGGACATGGAACTGTTCTGATAAGACATCCCAGCTCAATTGCCCGAGAAGACGAATCTGAGGCTAGCTCGCTCTCTGTCGATAATAAACATTATTCTGTCAATGAAATGTATTCCAATTCTTCAACTCTTAATCACCACAACAATAACAAGAATGTCAATTTTTTAACTCCTGGAACTCAAAGGATGAAGAACCCTGCTGGGAAAGAGGTGCATCACGAACAAGTCAAAAGGGATAAGTCTCACCATGAAAAATTACTAGTTCTTCGAAATCACAACTCACCTCTATGTGATATAGATCTAAATGATGTTCTAAATTTTGAGGAGTTTATGAGACAATTGACGAGTGAAGAGCAACAACAATTGATGAAGTATCTTCCTCTTGTTGACACCGATAAATGTCCTGACAGCCTCAAGGGTATGTTTGATAGCCCACAATTCAAGGAGAATTTTAGTTTCTTTCAGCAACTGCTAGCAGAAGGTATCTTCGATAACTCTTTTTTGGGCCCCAAAATTGAAGACTGCAAAACACTAAAAAGATTCGCCTTATTTGATTTGTCCAAATCCAAGTGGGTGGAACGATACAATCTACTTAAGGTTAGAGCGAACTCTACTTTGTTTTTCTATTCAACACCAATTTATCAAGATTTAGTGACCGAAGCTAGAAGAAGAATACTCCGAGCACCTCAAGCAATACAAAAGGCCCGAAGCCGACTACAGGCACTACTGAAAGAAAGTCATTTGTCCCAAGAGAAAGCTAAGAGACATAGAAAGGGGAAGCCTCGATCCATAATGACAACCCAGCTGAAGGGGTTGCTAGGGACAATGACCTTCTTATCAGCAGTTCAACAACAGATGACAGAGTTGAAAATGACCCCAGATAAAGGCCTCATGTATGTGGAAAGCCTTGTCAATAATAGGGCTGCCAAAAGCACTATGATAGACTCAAGAGCCACACATAATTTTATCACAGAAAATGAAGCTTGCCGCTTAGGCGTAAAGCTAGAAAAGAATAATGCTGGCAAGATGAAAACGGTGAATGCAAAAGCAATGCTAGTAGTTGGGGTGGTAAAAAGAGCTCAGCTAAAACTCAACACATGGTCGAGACCAATTGACTTCATTGTGGCACAAATGAATGATTTTGATACTATAATAGGGATGAAATTCTTGATGGAACACAAAGTCATCTTCATCCCATCGGCTAAGTGTATGGTAATTATTGGGAACAACCCAACAGTAGTTTCCGCTATCCTCAAGCAACCAAGTGCTATCAACATAAAGATGATCTCTGCAATGCAATTCAAAAAGGGATTGAAAAATCAAGAACCCACGTATATCCTTATTCCTTCGATCATGGATGAAGGCAAAGAAGAAATAATGTCATATGAAATTATGGAAGTTCTGGAAGAATACAAGGGTATTATGTCAGAAAAACATATCCTCACCAAGAAATTAAACTTTATGAAGACTATTATGAAGAGTTCAAAAATGGTGGCAATGAAGTCTGATCTCGGAGACAATGATGGTTTTTGTTTTAGCCCAAGAACCTTATTTGCTGTACCTCCGGACGGAAGCTCTTTTGTTCTTGAAACTCTAAATTTTGCCGAAGACTGTTCGGATCAAGATCTTCTTCTTGAAGTTCGTCCAAATAATTCCTTCCCTCAGGCAGAGCTTCTCCATCCGTCTTCAAGCTTTGGAGCTCAACAAGCAAGCACTTGCAGTAGCTCGACATATTCTCATATCGCACAACAGTGA 2214 39.52 MDPNDYEDQMACKVKIMSINKNKEGKSLKRKHSLENMGFGMVVSNQSHGFRKAMDEDISNRSSSGSAISNSESCAQFGSAEASDLTGPAQSVVWDSMVPSKKRTCLGQPKQSSVEKLTKDLYTILHEQQSSYFSGSSEEDLLFETGKPMVSVEIGHGTVLIRHPSSIAREDESEASSLSVDNKHYSVNEMYSNSSTLNHHNNNKNVNFLTPGTQRMKNPAGKEVHHEQVKRDKSHHEKLLVLRNHNSPLCDIDLNDVLNFEEFMRQLTSEEQQQLMKYLPLVDTDKCPDSLKGMFDSPQFKENFSFFQQLLAEGIFDNSFLGPKIEDCKTLKRFALFDLSKSKWVERYNLLKVRANSTLFFYSTPIYQDLVTEARRRILRAPQAIQKARSRLQALLKESHLSQEKAKRHRKGKPRSIMTTQLKGLLGTMTFLSAVQQQMTELKMTPDKGLMYVESLVNNRAAKSTMIDSRATHNFITENEACRLGVKLEKNNAGKMKTVNAKAMLVVGVVKRAQLKLNTWSRPIDFIVAQMNDFDTIIGMKFLMEHKVIFIPSAKCMVIIGNNPTVVSAILKQPSAINIKMISAMQFKKGLKNQEPTYILIPSIMDEGKEEIMSYEIMEVLEEYKGIMSEKHILTKKLNFMKTIMKSSKMVAMKSDLGDNDGFCFSPRTLFAVPPDGSSFVLETLNFAEDCSDQDLLLEVRPNNSFPQAELLHPSSSFGAQQASTCSSSTYSHIAQQ 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 12362627 12372497 - BLOR09583 Blo19g00240 74381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00240 737 PANTHER OSJNBB0038F03.10 PROTEIN 2 377 IPR044589 -
Blo19g00240 737 CDD retropepsin_like 457 543 - -
Blo19g00240 737 Gene3D Acid Proteases 430 568 IPR021109 -
Blo19g00240 737 Pfam Asx homology domain 230 318 IPR028020 -
Blo19g00240 737 Gene3D - 242 327 IPR038108 -
Blo19g00240 737 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 245 354 IPR044867 -
Blo19g00240 737 Pfam Retroviral aspartyl protease 454 549 - -
Blo19g00240 737 PANTHER OSJNBB0038F03.10 PROTEIN 621 736 IPR044589 -
Blo19g00240 737 PANTHER GATA TRANSCRIPTION FACTOR 26 621 736 - -
Blo19g00240 737 PANTHER GATA TRANSCRIPTION FACTOR 26 2 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00240 - - - vri:117917347 475.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00619 Blo-Chr14:11714629 Blo19g00240 Blo-Chr19:12362627 5.92E-74 dispersed
Blo16g00419 Blo-Chr16:16413499 Blo19g00240 Blo-Chr19:12362627 5.59E-59 dispersed
Blo19g00240 Blo-Chr19:12362627 Blo16g00990 Blo-Chr16:38205651 2.14E-27 dispersed
Blo19g00240 Blo-Chr19:12362627 Blo12g00258 Blo-Chr12:15784120 2.35E-69 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo12g00130 . 1 118 C2C2-Gata Transcription Factor Family AT3G24050 59.7 1.5e-37 153.7
Blo01g01777 . 78 328 C2C2-Gata Transcription Factor Family AT5G25830 51.4 4.4e-65 245.4
Blo16g00063 BCT 81 422 C2C2-Gata Transcription Factor Family AT5G66320 50.6 7.7e-73 271.2
Blo19g00240 . 20 358 C2C2-Gata Transcription Factor Family AT4G17570 55.7 2.3e-89 326.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo19g00240 Blo_Chr19 FPKM 8.127536 9.123662 29.12215 31.198307 10.936417 10.856669 10.195664 16.706202 15.714703 17.841333