Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00240 ATGGATCCTAATGACTATGAAGATCAAATGGCTTGTAAGGTGAAGATAATGTCTATAAACAAAAACAAAGAAGGGAAATCACTCAAACGGAAGCATAGTCTTGAAAACATGGGGTTTGGAATGGTAGTTTCCAATCAAAGTCATGGTTTCCGGAAGGCAATGGATGAAGATATAAGCAATAGATCAAGCTCAGGGTCAGCAATATCTAACTCCGAGAGCTGTGCGCAATTTGGTAGTGCCGAGGCTAGTGATCTGACAGGTCCAGCTCAGTCAGTTGTTTGGGATTCAATGGTACCTTCAAAAAAGAGGACTTGTTTGGGTCAACCTAAGCAATCGTCAGTAGAAAAACTTACAAAAGATCTATATACTATTTTACATGAACAACAATCGTCCTATTTCTCAGGATCATCTGAGGAAGATTTACTTTTCGAGACTGGAAAACCTATGGTCTCTGTTGAGATAGGACATGGAACTGTTCTGATAAGACATCCCAGCTCAATTGCCCGAGAAGACGAATCTGAGGCTAGCTCGCTCTCTGTCGATAATAAACATTATTCTGTCAATGAAATGTATTCCAATTCTTCAACTCTTAATCACCACAACAATAACAAGAATGTCAATTTTTTAACTCCTGGAACTCAAAGGATGAAGAACCCTGCTGGGAAAGAGGTGCATCACGAACAAGTCAAAAGGGATAAGTCTCACCATGAAAAATTACTAGTTCTTCGAAATCACAACTCACCTCTATGTGATATAGATCTAAATGATGTTCTAAATTTTGAGGAGTTTATGAGACAATTGACGAGTGAAGAGCAACAACAATTGATGAAGTATCTTCCTCTTGTTGACACCGATAAATGTCCTGACAGCCTCAAGGGTATGTTTGATAGCCCACAATTCAAGGAGAATTTTAGTTTCTTTCAGCAACTGCTAGCAGAAGGTATCTTCGATAACTCTTTTTTGGGCCCCAAAATTGAAGACTGCAAAACACTAAAAAGATTCGCCTTATTTGATTTGTCCAAATCCAAGTGGGTGGAACGATACAATCTACTTAAGGTTAGAGCGAACTCTACTTTGTTTTTCTATTCAACACCAATTTATCAAGATTTAGTGACCGAAGCTAGAAGAAGAATACTCCGAGCACCTCAAGCAATACAAAAGGCCCGAAGCCGACTACAGGCACTACTGAAAGAAAGTCATTTGTCCCAAGAGAAAGCTAAGAGACATAGAAAGGGGAAGCCTCGATCCATAATGACAACCCAGCTGAAGGGGTTGCTAGGGACAATGACCTTCTTATCAGCAGTTCAACAACAGATGACAGAGTTGAAAATGACCCCAGATAAAGGCCTCATGTATGTGGAAAGCCTTGTCAATAATAGGGCTGCCAAAAGCACTATGATAGACTCAAGAGCCACACATAATTTTATCACAGAAAATGAAGCTTGCCGCTTAGGCGTAAAGCTAGAAAAGAATAATGCTGGCAAGATGAAAACGGTGAATGCAAAAGCAATGCTAGTAGTTGGGGTGGTAAAAAGAGCTCAGCTAAAACTCAACACATGGTCGAGACCAATTGACTTCATTGTGGCACAAATGAATGATTTTGATACTATAATAGGGATGAAATTCTTGATGGAACACAAAGTCATCTTCATCCCATCGGCTAAGTGTATGGTAATTATTGGGAACAACCCAACAGTAGTTTCCGCTATCCTCAAGCAACCAAGTGCTATCAACATAAAGATGATCTCTGCAATGCAATTCAAAAAGGGATTGAAAAATCAAGAACCCACGTATATCCTTATTCCTTCGATCATGGATGAAGGCAAAGAAGAAATAATGTCATATGAAATTATGGAAGTTCTGGAAGAATACAAGGGTATTATGTCAGAAAAACATATCCTCACCAAGAAATTAAACTTTATGAAGACTATTATGAAGAGTTCAAAAATGGTGGCAATGAAGTCTGATCTCGGAGACAATGATGGTTTTTGTTTTAGCCCAAGAACCTTATTTGCTGTACCTCCGGACGGAAGCTCTTTTGTTCTTGAAACTCTAAATTTTGCCGAAGACTGTTCGGATCAAGATCTTCTTCTTGAAGTTCGTCCAAATAATTCCTTCCCTCAGGCAGAGCTTCTCCATCCGTCTTCAAGCTTTGGAGCTCAACAAGCAAGCACTTGCAGTAGCTCGACATATTCTCATATCGCACAACAGTGA 2214 39.52 MDPNDYEDQMACKVKIMSINKNKEGKSLKRKHSLENMGFGMVVSNQSHGFRKAMDEDISNRSSSGSAISNSESCAQFGSAEASDLTGPAQSVVWDSMVPSKKRTCLGQPKQSSVEKLTKDLYTILHEQQSSYFSGSSEEDLLFETGKPMVSVEIGHGTVLIRHPSSIAREDESEASSLSVDNKHYSVNEMYSNSSTLNHHNNNKNVNFLTPGTQRMKNPAGKEVHHEQVKRDKSHHEKLLVLRNHNSPLCDIDLNDVLNFEEFMRQLTSEEQQQLMKYLPLVDTDKCPDSLKGMFDSPQFKENFSFFQQLLAEGIFDNSFLGPKIEDCKTLKRFALFDLSKSKWVERYNLLKVRANSTLFFYSTPIYQDLVTEARRRILRAPQAIQKARSRLQALLKESHLSQEKAKRHRKGKPRSIMTTQLKGLLGTMTFLSAVQQQMTELKMTPDKGLMYVESLVNNRAAKSTMIDSRATHNFITENEACRLGVKLEKNNAGKMKTVNAKAMLVVGVVKRAQLKLNTWSRPIDFIVAQMNDFDTIIGMKFLMEHKVIFIPSAKCMVIIGNNPTVVSAILKQPSAINIKMISAMQFKKGLKNQEPTYILIPSIMDEGKEEIMSYEIMEVLEEYKGIMSEKHILTKKLNFMKTIMKSSKMVAMKSDLGDNDGFCFSPRTLFAVPPDGSSFVLETLNFAEDCSDQDLLLEVRPNNSFPQAELLHPSSSFGAQQASTCSSSTYSHIAQQ 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 12362627 12372497 - BLOR09583 Blo19g00240 74381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00240 737 PANTHER OSJNBB0038F03.10 PROTEIN 2 377 IPR044589 -
Blo19g00240 737 CDD retropepsin_like 457 543 - -
Blo19g00240 737 Gene3D Acid Proteases 430 568 IPR021109 -
Blo19g00240 737 Pfam Asx homology domain 230 318 IPR028020 -
Blo19g00240 737 Gene3D - 242 327 IPR038108 -
Blo19g00240 737 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 245 354 IPR044867 -
Blo19g00240 737 Pfam Retroviral aspartyl protease 454 549 - -
Blo19g00240 737 PANTHER OSJNBB0038F03.10 PROTEIN 621 736 IPR044589 -
Blo19g00240 737 PANTHER GATA TRANSCRIPTION FACTOR 26 621 736 - -
Blo19g00240 737 PANTHER GATA TRANSCRIPTION FACTOR 26 2 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00619 Blo-Chr14:11714629 Blo19g00240 Blo-Chr19:12362627 5.92E-74 dispersed
Blo16g00419 Blo-Chr16:16413499 Blo19g00240 Blo-Chr19:12362627 5.59E-59 dispersed
Blo19g00240 Blo-Chr19:12362627 Blo16g00990 Blo-Chr16:38205651 2.14E-27 dispersed
Blo19g00240 Blo-Chr19:12362627 Blo12g00258 Blo-Chr12:15784120 2.35E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00240 - - vri:117917347 475.322