Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00245 ATGGAACTTTTTCCTGCCCAACCAGACTTATCTCTACAAATCAGCCCTCCAAACGCAAAGCCATCGTTAGGTTGCAGAAGAATTAGAGAAGAAGAGGTGGATTTGGGTTTTTGGAAAGTAGCTTTGGATTCAAGAACCTCCATCTCATCAATGGCAAAACCTGATACTTATTTTGATCTTTCTCTCTCTAATCCCCCTCTCTGTGAACCGAATTCCGACACTTTTAATCAGCTTCAAACCGTGAATGGCAATCTGTTACAGACCTTTCAGCCAAATCAGTTGCCTCACGTCCATAATTTCCATCAACAGAAGACTCTTCTTCATCATAAGCCACTTCTTAATCAGCGCCAGCGTCAACACGAGCTTAGTCCTAAGCTTGGATTCTGGAAACCCATTAGAGGAATTCCTGTTTATCAGAATCCTCCTTTTTCATTCTCTCAACGCCCTAATTTAGGCTCCACTTCTTTGTCTTCCTCCATTATTAACAGTGGCTCAACTTCTCCAAGCTCGTATATGACCCAAGGTCTGATGCGATCGAGATGGTTGTCGAGATTTCCAGCCAAACGCTCAATAAGAGCGCCGAGGATGCGGTGGACCACCACTCTACATGCCCGTTTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTTGAGCTAATGGATGTGAAAGATCTCACCTTGGCCCATGTTAAATCACATTTACAGATGTATAGAACCGTGAAGACCACTGACAGAGCTGCAGCTTCTTCAGTTATTCAACTTGTTTACGCTGGCCAACCAGATTTGTACGAAGGGTCTTCTGGGGATTATACAGAAGAGTTAATGCTTGACATCCACAATCCAAGAAGAGGGGATGAGCTCTCTATTCAACAGGGAACGCAAAAGGCTCATGAAGACAGGGATTGTGGCGGAGTTTGGTCCAATTCTTCAAGCAGGGAAGCTTGGTTGATTGGAAACCCAAACGATTCCTGTGGAAACTTAGCTTCTACTGAGACAGAATTGGATCCAAAGTGCTTAAGCTACGAGAGAATATCAGATATAAGCACATTCAAAAACCTTTCAGGGACTATAATGCAAAAGAAGCCTAATTTGGAGTTCACTTTGGGCAGACCACTTTGA 1143 43.74 MELFPAQPDLSLQISPPNAKPSLGCRRIREEEVDLGFWKVALDSRTSISSMAKPDTYFDLSLSNPPLCEPNSDTFNQLQTVNGNLLQTFQPNQLPHVHNFHQQKTLLHHKPLLNQRQRQHELSPKLGFWKPIRGIPVYQNPPFSFSQRPNLGSTSLSSSIINSGSTSPSSYMTQGLMRSRWLSRFPAKRSIRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSVIQLVYAGQPDLYEGSSGDYTEELMLDIHNPRRGDELSIQQGTQKAHEDRDCGGVWSNSSSREAWLIGNPNDSCGNLASTETELDPKCLSYERISDISTFKNLSGTIMQKKPNLEFTLGRPL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 12987645 12991094 - BLOR09588 Blo19g00245 74386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00245 380 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 379 IPR044847 GO:0000976|GO:0006355|GO:0010158
Blo19g00245 380 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 379 - -
Blo19g00245 380 SUPERFAMILY Homeodomain-like 191 247 IPR009057 -
Blo19g00245 380 Pfam Myb-like DNA-binding domain 195 246 IPR001005 -
Blo19g00245 380 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 194 247 IPR006447 GO:0003677
Blo19g00245 380 Gene3D - 193 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00245 - - - qsu:112010545 459.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00879 Blo-Chr3:34644808 Blo19g00245 Blo-Chr19:12987645 0 dispersed
Blo17g00475 Blo-Chr17:6723205 Blo19g00245 Blo-Chr19:12987645 6.62E-48 dispersed
Blo18g00828 Blo-Chr18:24386123 Blo19g00245 Blo-Chr19:12987645 9.28E-36 dispersed
Blo19g00245 Blo-Chr19:12987645 Blo06g00150 Blo-Chr6:6011330 6.98E-18 dispersed
Blo19g00245 Blo-Chr19:12987645 Blo18g00480 Blo-Chr18:5818249 5.34E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g717 . . . . . . . . Cmo06g00638 . Cma02g01632 . Car02g01391 . . . . . . . . . . . Cla10g00132 Cam10g0130 Cec10g0139 Cco10g0139 Clacu10g0135 Cmu10g0982 Cre10g0392 . . . . . . Chy04g00122 . . Blo19g00245 . . . . . . . Cmo02g01676 Cmo19g00231 Cma06g00631 . Car06g00565 . . Cpe15g00191 . . . . . . . . . . . . . . . . . Cme04g00145
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13634 PF00249 Myb_DNA-binding 1.80E-05 CL0123 Blo TF