Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00246 ATGTATTTATCTAAAGAGGCCATTAGTGGGTTAGAATTTCTGAAGAGAAAAAGACTTCAGAGAATGAAAACGCAAATTGTCTCTGAAAATGTATCTGTCACCAATTTGATTGCTAGAAGTGGAGGAGATGCTTTGAATGTTTCAACTTCATGTGGAGTAAGATTAATTGGTAATGCGGATTCCTTTTCTCAATCAAGTAGTTCATCGAATGCAAAGGATCTTTTTTCAAAACGCAAAGTGGAGAAATTTAGCACTAGTGACTTAGAATGGATTGAGAAGATTCCAGAATGCCCTGTATATTGTCCTTCAAAGGAGGAGTTTGAAGACCCTTTGGTTTATTTGCAAAAGATTGCTCCACATGCCTCTCAATATGGTGTATGCAAAGTCGTCTCCCCTTTAAGTGCTTCTGTTCCAGCTGGTGTTGTGTTAATGAAGGAAAAAGCTGGGTTTAAGTTTCCTACGAGAGTGCAACCTCTTCGCCTTGCTGAGTGGGACATGGAGGACAGAATCACATTTTTCATGAGTGGAAGAAAGTATACTTTTCGTGATTTCGAAAAAATGGCGAACAAGAGTTTTGCACGAAGATACTGTAGTTCTGGTTGTCTCCCTTCCGCATATTTGGAGAAGGAGTTTTGGACAGAAATTGCTTGTGGAAAGACGGAAACAGTTGAATATGCATGTGATGTAGTTGGTAGTGCCTTTTCATCATCTCCAAATGATGAGCTTGGAAGCAGCAAATGGAATTTGAAGAAACTTTCACGCTTACCGAAGTCCATTTTGCGTCTGTTAGAAACAGCTATTCCGGGAGTGACTGATCCCATGCTTTACATTGGTATGCTGTTTAGTATATTTGCTTGGCATGTGGAGGACCATTATTTGTACAGTATTAATTATCATCACTGTGGAGCATCAAAAACGTGGTATGGTATACCTGGTCATGCTGCTTTGGAGTTTGAAAAGGTGGTGAGAGAGCACGTATACACACATGATATAATGTCAACCGATGGGGAAAATGGAGCTTTTGATGTCCTCCTGGGGAAAACAACACTATTTCCTCCAAATATTCTATTGGAACATGATGTCCCTGTCTACAAGGCAGTGCAAAACCCTGGGGAGTTCATAATTACCTTTCCTAGAGCATACCATGCAGGATTTAGTCATGGTTTTAATTGTGGTGAGGCTGTGAACTTTGCGATTAATGATTGGTTCCCATTGGGGGCAGTAGCTAGCCAACGGTATGCAGTTCTTAATAGGATGCCTCTACTTCCTCATGAAGAACTTCTGTGTAAAGAAGCACTGCTTTTGCACAAGAGTTTAGCACTTGAAGATTTGAGTCATTCATCTTCAGATTCTGTATCTCATAATTCCATCAAGGCTTCTTTCGCCAGTCTAGTACGCTTCCAGCATTGTGCTCGATGGTTGCTGATGAAGTCAAAGGCATGCACTGGTGTTTCTATAAATTGTCATGGGACCATCCTCTGTAGTTTATGCAAACGTGATTGTTACATAGCTTATGTTAACTGCAGCTGTTATGGACATCCAGTGTGCCTTCGCCATGATGTTCAGTCTCTAGACTTCTCTTGTGGTGGCAAGCATACTCTCTATTTGCGGGAGGATGTTTCAGAAATGGAACAGGCAGCCCAGAAGTTTGAGCAGGAAGTAGGGATATTGGACGAGATTTGTGGACAAGCTGGATGGGATAATGACTTGTATTCTTATCCTTGTGAAAATTTGTTTCAAAAGGCTGAAGAGGGTGGATACGAGCCTTATTGTGATATAACAGTTGAGTTTTATCCTGAAACGACTGACCTTGATAGGTTTCAATTGTTAGAGCAAGAGAGGATCTCTTATAGTCAACCCATGTCTAGTGATATCACTGAAGAGATCAAATCTGGAATGCCCAAATCATCTGTTACCCAAGGGTCATTGTCTTTTTCTTCATTTCTGGAGCCTTTGGATTCTGCTTTTGCACAAAACCATGCTAGATTTTACTCAAGAAATCTTGATTCTGAAAGGTTTTCTCAAGAAGCTCATTTTAGTGCATATGAATCTTCACTATCTGTCCCTTTCTGTGAGAACTACACCAAGACTTGTGCAGAAAATACTTGTAAATCACAAACACGGCCCCTTGTTAATGAAGATAGTGATAGTTCTGATGAGATATTTCGGGTTAAGCGCCGATCGTTAAAGTCAGAAAAGAAAAATATGAATGAGACATCTTCTAAGCATTCTGAACACCAGGGCCTTAAAAGATTGAAAAAGTTACAACCTCATATAAGAAGCAGGCAACTGATTTCATCAGATTATAGCCGAACAGGTGAATCGAGTTCCAAACTTTGCTGTGCCACCTGTGAAGGAACTGCGGAGAATGTTTTGAATGAGAGGTCTGCTAGAGGAAGTACCATTCCCATCTCTATTAAGTTTAAGAGATTGCCCAATGAGGAGGCTACAAGTCAAAGACTGCATGAAAATCACGGAAAATATCGGCTTGAACATGATATGACTAAGCCGTTGAGGGAACAGCTCTCAAAGAGTAATGAGATTGAGCCAAAGCGCCTTAAGCAAACTGTTCCCTTGTACATCAGACTTGTTCCAATAAAATCTCAGAGAAATGCCTCATTTTCTCCATCGATGACAATTCTCCATCTTGCTGCTTTTGGAGACAAGTGTTTGGAGGCTGTGGGCGGACAACGAGAGTTGAGTGAGTATGGTCTTCTTTATGGATTGAGTCGGAGCAAATCCATTCCCAAGCAACCAGGTTCTTTTTCTTATTCATTCAAGAAAGTTGGTCCAAATTTCAGCTCCATAGCTTCTAAAAAGGAGGTACAAGCTTCCAAAGTTCACTTTCCAAAAGTGAATCTCAGCCAAATTAAGGAAAGTGGAGTTACGGTCGAGTATCTCGAAGGCCCATTCGACTGCAACATCGACCGCCACAAAAGATTGAATATGTGTTATTTTTCGGATGCCATCCTCGACGCGGCCTCAACCATCCTGCGACCACCAGTTCAGAATATAGCCAGCTTTGGAAGATCGACATATTCCAATACTTCAACACTTCAACATCCTATTTTCAGGGACAAAACTACTCATGGATTTTTATTTTGGACGAGGAGAAGGTACAATCATGCATCCCTACATTTAGTGGATATGAAGAAGATTACTTGGCTTAGGAAGCAGAGATCGAAGAGATCATTCAAGGTTCTGATATTTCAACAAAGACCATTTCCTCCACCAGCATTTATCGAGCCTCCAATACCGATGGCTGAGGATCCTATGGACACTGACATGCTAGCTTCATCCTATCCTTTCTCAGGATGTTTTATGGGTCATAGGATCTCTATGCCGAAAGAAGACTATCACGCTCTTCTAGCAGGTATGGCAAATATGACCATGGAAATGAGAGGGGTTAAGGAAATGCTTGCTAGTCTGAACTAG 3435 41.11 MYLSKEAISGLEFLKRKRLQRMKTQIVSENVSVTNLIARSGGDALNVSTSCGVRLIGNADSFSQSSSSSNAKDLFSKRKVEKFSTSDLEWIEKIPECPVYCPSKEEFEDPLVYLQKIAPHASQYGVCKVVSPLSASVPAGVVLMKEKAGFKFPTRVQPLRLAEWDMEDRITFFMSGRKYTFRDFEKMANKSFARRYCSSGCLPSAYLEKEFWTEIACGKTETVEYACDVVGSAFSSSPNDELGSSKWNLKKLSRLPKSILRLLETAIPGVTDPMLYIGMLFSIFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFEKVVREHVYTHDIMSTDGENGAFDVLLGKTTLFPPNILLEHDVPVYKAVQNPGEFIITFPRAYHAGFSHGFNCGEAVNFAINDWFPLGAVASQRYAVLNRMPLLPHEELLCKEALLLHKSLALEDLSHSSSDSVSHNSIKASFASLVRFQHCARWLLMKSKACTGVSINCHGTILCSLCKRDCYIAYVNCSCYGHPVCLRHDVQSLDFSCGGKHTLYLREDVSEMEQAAQKFEQEVGILDEICGQAGWDNDLYSYPCENLFQKAEEGGYEPYCDITVEFYPETTDLDRFQLLEQERISYSQPMSSDITEEIKSGMPKSSVTQGSLSFSSFLEPLDSAFAQNHARFYSRNLDSERFSQEAHFSAYESSLSVPFCENYTKTCAENTCKSQTRPLVNEDSDSSDEIFRVKRRSLKSEKKNMNETSSKHSEHQGLKRLKKLQPHIRSRQLISSDYSRTGESSSKLCCATCEGTAENVLNERSARGSTIPISIKFKRLPNEEATSQRLHENHGKYRLEHDMTKPLREQLSKSNEIEPKRLKQTVPLYIRLVPIKSQRNASFSPSMTILHLAAFGDKCLEAVGGQRELSEYGLLYGLSRSKSIPKQPGSFSYSFKKVGPNFSSIASKKEVQASKVHFPKVNLSQIKESGVTVEYLEGPFDCNIDRHKRLNMCYFSDAILDAASTILRPPVQNIASFGRSTYSNTSTLQHPIFRDKTTHGFLFWTRRRYNHASLHLVDMKKITWLRKQRSKRSFKVLIFQQRPFPPPAFIEPPIPMAEDPMDTDMLASSYPFSGCFMGHRISMPKEDYHALLAGMANMTMEMRGVKEMLASLN 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 13243760 13259816 - BLOR09589 Blo19g00246 74387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00246 1144 SMART cupin_9 241 414 IPR003347 -
Blo19g00246 1144 ProSiteProfiles JmjC domain profile. 244 414 IPR003347 -
Blo19g00246 1144 MobiDBLite consensus disorder prediction 727 752 - -
Blo19g00246 1144 MobiDBLite consensus disorder prediction 727 757 - -
Blo19g00246 1144 ProSiteProfiles JmjN domain profile. 97 138 IPR003349 -
Blo19g00246 1144 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 27 860 - -
Blo19g00246 1144 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 860 - -
Blo19g00246 1144 Pfam jmjN domain 98 130 IPR003349 -
Blo19g00246 1144 Gene3D Cupin 97 460 - -
Blo19g00246 1144 Pfam JmjC domain, hydroxylase 274 397 IPR003347 -
Blo19g00246 1144 Pfam C5HC2 zinc finger 494 545 IPR004198 -
Blo19g00246 1144 SUPERFAMILY Clavaminate synthase-like 175 431 - -
Blo19g00246 1144 SMART JmjN_1 96 137 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00246 - - - zju:107431559 1103.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00878 Blo-Chr3:34628087 Blo19g00246 Blo-Chr19:13243760 0 dispersed
Blo10g00272 Blo-Chr10:3891155 Blo19g00246 Blo-Chr19:13243760 1.67E-59 dispersed
Blo11g00440 Blo-Chr11:3878954 Blo19g00246 Blo-Chr19:13243760 8.62E-47 dispersed
Blo11g01013 Blo-Chr11:26226934 Blo19g00246 Blo-Chr19:13243760 3.79E-12 dispersed
Blo15g00228 Blo-Chr15:2371472 Blo19g00246 Blo-Chr19:13243760 5.70E-73 dispersed
Blo19g00246 Blo-Chr19:13243760 Blo03g00362 Blo-Chr3:8136465 2.41E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13635 PF02373 JmjC 1.20E-39 CL0029 Blo TR