Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00299 ATGTTTTTCCTCTTCTCCCCAGAAGACGTGGAGCTTTCCACTTGGCGTCCTCGTGTTGGACCACCTCTATTGAAATGGGTGATTGTCCATCACCTGGCACATCCTTTAGAAACTTTGCTTTCTCTTCTGTCTATAAAGTGGAGGGTCATGCGTGTGAAGCTACTGCTTCTAGAGGTGCTGCATTTTGCTAAGAGCTGTATTCTTCTGAGAGCAGAGTGTGTGTATAAGAAGTGGGTTAAGTCGTGGCCAGAGGAGGTCTACACCACAAGTGATTGTTATGACGTCTGCGTGCTTAATGTGGAGGAGGAGGTATTGTCGGTTGAGAACTTGGGTTATCCAAAAAGCTATTATTTTCTTAGGATTGTGAAAATGGTGAGGGGAAGAACTGAGATGAAGAGGATAGAGAATGCAACGAGCCGTCAAGTAACTTTTTCAAAGCGTAGAAATGGGCTGCTGAAGAAAGCCTTTGAGCTGTCAGTTCTTTGTGACGCTGAAGTTGCACTCATCATCTTCTCCACCAGAGGAAAACTCTACGAATTTTCCAGTCGCAGCATGCATAAGACTATAGATCGTTATAAGAACAGAACCAAGGAACTAGATCACGGCAAAAGAGCTATTCAAGAAAATATCCAGGTTAGATTTAATTTTGAAATTTTTGACATTGGAGTGAACAGAAAACTCATGGGAGAGGGCTTGGATTCATGTTCTATTGACGAACTACAACAAACAGAAAAGCAATTGGAGAAAAGCTTGAGCAAGATTAGGACAAAAAAGGAGAGCAAATTAATCGAGGAAAATGCAAAATTATGCGCTAAGGTGATCTTCATACGATATTTCTCTCTTTCTTTCCATGGTTTTTACCATGACTGCATCGCGATTATCGTCTCACTCTCTGGAGCTCTTTTCTCTCAAGAGTGGAATTCAACCATCAGACTTAAAAGGAAGGAGAGAAGGAGAAATGCTAGGGAGATTGAGTTTGGAAGTGGAGACAGGATTGTTCATAGGACCACCTCAAAGACGCACATTCCCGACAACGACAACGTTTCTTTGATACTTGATTCCGTCGTAAAAATAGTCTCCAATCGAAGAAATAGTCAAGAGATGCTAATACCAGGAGTAGAGGAGGATGCATTTCCTGTGGAGTCTGCTGATTATCCACATGAATCGCGACTTGAGCGGGGAAGAGGAAATATTCCGTGTAATGAGGAAGGGTCCCGAGCACCCGGCCAGCGAGAGGGCAACGGTTGTGACGAAGCTCTTGATCATATCGCTGAGGTTGTAGAGCAACAATCTCAAAACATGCAACGACAATTTCAATACATGGAGCAGCACTTTCGATACATGGAGAGAATCATGGGGCTGGATCATGAAAATGGTAATGGGAACCAACAAGTAATATCGATTCAGGCTGTTAAAAGGGAAGCCTGA 1428 43.14 MFFLFSPEDVELSTWRPRVGPPLLKWVIVHHLAHPLETLLSLLSIKWRVMRVKLLLLEVLHFAKSCILLRAECVYKKWVKSWPEEVYTTSDCYDVCVLNVEEEVLSVENLGYPKSYYFLRIVKMVRGRTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSRSMHKTIDRYKNRTKELDHGKRAIQENIQVRFNFEIFDIGVNRKLMGEGLDSCSIDELQQTEKQLEKSLSKIRTKKESKLIEENAKLCAKVIFIRYFSLSFHGFYHDCIAIIVSLSGALFSQEWNSTIRLKRKERRRNAREIEFGSGDRIVHRTTSKTHIPDNDNVSLILDSVVKIVSNRRNSQEMLIPGVEEDAFPVESADYPHESRLERGRGNIPCNEEGSRAPGQREGNGCDEALDHIAEVVEQQSQNMQRQFQYMEQHFRYMERIMGLDHENGNGNQQVISIQAVKREA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19015024 19029726 - BLOR09642 Blo19g00299 74440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00299 475 SMART madsneu2 124 183 IPR002100 GO:0003677|GO:0046983
Blo19g00299 475 PANTHER MADS BOX PROTEIN 117 272 - -
Blo19g00299 475 Gene3D - 137 213 IPR036879 GO:0003677|GO:0046983
Blo19g00299 475 Coils Coil 237 260 - -
Blo19g00299 475 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 133 180 IPR002100 GO:0003677|GO:0046983
Blo19g00299 475 PANTHER OS02G0104100 PROTEIN 117 272 - -
Blo19g00299 475 PRINTS MADS domain signature 146 161 IPR002100 GO:0003677|GO:0046983
Blo19g00299 475 PRINTS MADS domain signature 161 182 IPR002100 GO:0003677|GO:0046983
Blo19g00299 475 PRINTS MADS domain signature 126 146 IPR002100 GO:0003677|GO:0046983
Blo19g00299 475 MobiDBLite consensus disorder prediction 390 413 - -
Blo19g00299 475 Pfam K-box region 224 269 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo19g00299 475 SUPERFAMILY SRF-like 126 196 IPR036879 GO:0003677|GO:0046983
Blo19g00299 475 CDD MADS_MEF2_like 126 194 IPR033896 GO:0000977|GO:0045944
Blo19g00299 475 ProSiteProfiles MADS-box domain profile. 124 184 IPR002100 GO:0003677|GO:0046983
Blo19g00299 475 ProSitePatterns MADS-box domain signature. 126 180 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00631 Blo-Chr2:13444399 Blo19g00299 Blo-Chr19:19015024 6.00E-14 dispersed
Blo13g00342 Blo-Chr13:19792114 Blo19g00299 Blo-Chr19:19015024 9.24E-27 dispersed
Blo18g00645 Blo-Chr18:11464570 Blo19g00299 Blo-Chr19:19015024 2.02E-20 dispersed
Blo19g00299 Blo-Chr19:19015024 Blo01g00140 Blo-Chr1:1906764 2.91E-37 dispersed
Blo19g00299 Blo-Chr19:19015024 Blo15g00152 Blo-Chr15:1517856 8.01E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13636 PF01486 K-box 1.40E-12 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00299 - - csv:101220518 191.045