Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00301 ATGCAAGAACCAGGTTTAGGACTGATCGCCGCCGCAGCAGGTTGTGGTTCTACTTTGAGCGGCAAACTATCAGTCTCTGGCGACCACCGTCACCGGCAAATCAAGGCTGAGATAGCCGCTCATCCAATATACGAGCAGCTTCTCGCCGCCCACTTGGCTTGTCTTCGGGTAGCAACCCCTATCGATCAGTTGCCGCTCATAGACTCGCAGTTGGGGCAATCAGAACATCTTTTACGCTCTTATTTGGCGCACTCGCAGCATCACCCGGGCCATTCTCTCTCCCCCCATGAGCGCCAAGAGCTTGACAACTGCTTGGTTTGTTTGAGTGGGGAGAAAGAGAAGGAGAAAAGTTTTTGTGGAGTTGTTAGGTTTGGTGGATGTTATTATCAAGTTGGAGCTAGTCTAGGAGAAGGTACAGGAGCAGCAATGTCAGATGAAGAAGAAGATGTGCAGATGGATTTCTCGTTGGACCCATGTGGTGCAGATGGCCATGACATGATGGGTTTTGGCCCTCTTCTTCCGACTGAATCTGAAAGGTCTTTAATGGAGAGGGTTCGCCAAGAACTCAAGATTGAGTTGAAGCAGGCTTTCCTATTATTTACGTTCACTAATGAAGGTTTTAAGTCTAGAATTGAAGATGTTAGAGAAGAAATACTAAGGAAAAGAAGGGCTGGAAAATTACCCGGTGATACAACTACTGTGCTAAAAACTTGGTGGCAACAACATTCTAAGTGGCCTTACCCAACTGAAGATGATAAGGCAAAGCTAGTGGAGGAGACAGGATTGCAGTTGAAACAAATAAACAACTGGTTCATCAACCAAAGAAAAAGAAATTGGCATAGCAATTCTCAATCTGTGACATCCTTAAAGTCCAAGCGCAAGAGATAA 888 45.95 MQEPGLGLIAAAAGCGSTLSGKLSVSGDHRHRQIKAEIAAHPIYEQLLAAHLACLRVATPIDQLPLIDSQLGQSEHLLRSYLAHSQHHPGHSLSPHERQELDNCLVCLSGEKEKEKSFCGVVRFGGCYYQVGASLGEGTGAAMSDEEEDVQMDFSLDPCGADGHDMMGFGPLLPTESERSLMERVRQELKIELKQAFLLFTFTNEGFKSRIEDVREEILRKRRAGKLPGDTTTVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19356768 19360017 + BLOR09644 Blo19g00301 74442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00301 295 ProSiteProfiles 'Homeobox' domain profile. 218 281 IPR001356 GO:0003677
Blo19g00301 295 SUPERFAMILY Homeodomain-like 220 285 IPR009057 -
Blo19g00301 295 Gene3D - 217 291 - -
Blo19g00301 295 Pfam Homeobox KN domain 238 277 IPR008422 GO:0003677|GO:0006355
Blo19g00301 295 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 295 - -
Blo19g00301 295 SMART HOX_1 220 285 IPR001356 GO:0003677
Blo19g00301 295 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 295 - -
Blo19g00301 295 SMART KNOX1_2 32 76 IPR005540 GO:0003677|GO:0005634
Blo19g00301 295 Pfam KNOX1 domain 33 74 IPR005540 GO:0003677|GO:0005634
Blo19g00301 295 CDD homeodomain 221 282 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo03g00378 Blo19g00301 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01400 Blo-Chr1:52435054 Blo19g00301 Blo-Chr19:19356768 4.78E-68 dispersed
Blo12g01065 Blo-Chr12:28422696 Blo19g00301 Blo-Chr19:19356768 8.75E-88 dispersed
Blo19g00301 Blo-Chr19:19356768 Blo04g00653 Blo-Chr4:5718728 4.33E-17 dispersed
Blo19g00301 Blo-Chr19:19356768 Blo03g00378 Blo-Chr3:8848352 3.47E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13637 PF03790 KNOX1 2.80E-17 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00301 - - csv:101206054 408.297