Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00306 ATGACGTCGTATCAGGAGCAGGAGTTCGATCAGAACGACGACGGAGGCAACTCCGATCTCAGCACCAGCGCTGGAGACCCGGAAGAAGACCCTCCGATGACGGAGCTCAGAAATAATAAGATGGCTTTTCAAGCTGCCCCGATGAAAGAAGAACCGGTCGATTCGGACCTAATATCGGACCACGAGGAGAAGACGAAACTGCCGCTGAAACCGCCCATTGGGGTGCTTCCCGTCGATATGAAGCTACCTTTGGAGATGCCGGTGAGTACATCTCGGAGGTCTACGAAGGACAGGCACACCAAGGTAGAGGGACGTGGTCGGAGGATCCGAATACCCGCTACATGCGCCGCCCGAATATTTCAACTGACCCGAGAATTGGGTCACAAATCAGACGGTGAAACCGTCCGGTGGCTTCTCGAACACGCAGAGGAAGCGATAATTGAGGCTACAGGAACCGGGACTGTGCCAGCCATCGCCGTCTCCGTCGGTGGGACTCTTAAAATCCCAACCACCGCTAACTCCGTCGGCCTGAGCAATCACGAGAATAAAAAGAGAAAGCGGCCATCGAACTCTGAGTTCTTCGACATTAACGAAGCCGTTTCACACTCAACCGGGTTCGCTCCAGTCCAACCGGTCACCCCTACGGCGGCGATTCCGCAGGGTCTTTTACCAGTATGGGCCGTAGGAAACGCCGGTATGATGGTTCCCGCCAACGCCTTCTGGATGATTCAGGCTGCGCCGACTCCAACAGGCCAGGTCACAGCCGCCGGACCGTCAAACCAAAACCCTCAGATATGGACCATATCGCCGACTGTAACGCAGGTTTTTAACATGTCTGCGAGACCCATTTCCTCTTTCGTCTCAAATCAGCCAATAGGGGTAACTATACCATCTGGGATAGAGATCCGGCCGCCGGCGCTCTCCTTCTGCAACAGCTTGTCGACTTCAGCCGTTAGCACGAGCACTTCCGGGCCCAAAACGGCTAAGAAATCAGCTACTATGGCGGCGCCTAGCGTGAGCTCTAGTGGCAGCGGAAATGGCGGGTCCAAAGCTCAGATGCTTAGGGATTTTTCATTGGAGATTTTTGACAAGCAGGAATTACAGTTTATGGGTAGGAATGGGAATAACCAGAAGACACAATCTTCTTTGAAACCATGA 1158 53.71 MTSYQEQEFDQNDDGGNSDLSTSAGDPEEDPPMTELRNNKMAFQAAPMKEEPVDSDLISDHEEKTKLPLKPPIGVLPVDMKLPLEMPVSTSRRSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVSVGGTLKIPTTANSVGLSNHENKKRKRPSNSEFFDINEAVSHSTGFAPVQPVTPTAAIPQGLLPVWAVGNAGMMVPANAFWMIQAAPTPTGQVTAAGPSNQNPQIWTISPTVTQVFNMSARPISSFVSNQPIGVTIPSGIEIRPPALSFCNSLSTSAVSTSTSGPKTAKKSATMAAPSVSSSGSGNGGSKAQMLRDFSLEIFDKQELQFMGRNGNNQKTQSSLKP 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19546337 19547494 - BLOR09649 Blo19g00306 74447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00306 385 MobiDBLite consensus disorder prediction 1 24 - -
Blo19g00306 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 380 IPR005333 GO:0003700
Blo19g00306 385 MobiDBLite consensus disorder prediction 1 53 - -
Blo19g00306 385 MobiDBLite consensus disorder prediction 318 351 - -
Blo19g00306 385 ProSiteProfiles TCP domain profile. 95 149 IPR017887 -
Blo19g00306 385 Pfam TCP family transcription factor 94 179 IPR017887 -
Blo19g00306 385 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 12 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00306 - - - zju:107405250 446.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00441 Blo-Chr7:8806076 Blo19g00306 Blo-Chr19:19546337 2.66E-54 dispersed
Blo19g00306 Blo-Chr19:19546337 Blo16g01121 Blo-Chr16:39702350 1.25E-29 dispersed
Blo19g00306 Blo-Chr19:19546337 Blo13g00013 Blo-Chr13:195089 1.55E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g416 . . . . . . Bma07g01629 Bma14g00579 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0740 Cone9ag0744 . . . . . Blo19g00306 Bda07g00504 Bda09g00062 Bpe08g01471 Bpe11g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004457 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13638 PF03634 TCP 4.70E-28 No_clan Blo TF