Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00316 ATGGGCGGCGGTCCTCGGACCTTCCCAGGCGGTCTTAACAAGTGGCAGTGGAAGCGAATGCATGAGAAACGAGCTAAAGAAAAGGAGAGGACGCTCCTCGAGCAAGAAAAACAGATCTATCATGCACGAATTCGCTCACAAATCCGCGATAAACTCTCTGGAAAATCCGATTCATTGGCGGAAATGGAACCGTCAACCAGTCATGAGCCTATGACCCCCGGCGATCATATTAAAGCTCTAGCTAATAGGTTTATGAAAGAAGGAGCTATAGATTTGTGGAACGAATCCGATGGTCCTCTAACTATGTCGGAAGGACAAGATTTCATTGAATCAAGTGGGCGGAGTAGATCGATTTCATCACCTATGGACGGGAGGAAATTCATTTCTGAGAAACATCATGATTCAAGAAACTACGATAATCTGAATTTAGGAAAAGTAAATGCCAACTACGTGAAGGGTAGGAGTTACTCAGTGCAAAGTCGGAGAAGATGTCCTAGAAATGAGAGTTCTTCAAGTGATGACGAAGAGGATTATGGCTTAGAGGTCGACTCTGTAAAGGCGTTTTCACATAAATCGGCACGTAATATGGGGAATTTGCGTCGCATGGGAATAGATGGAAATGTCGCGACTAAAAAAAGGACGAGTTTTAATAGGCCTGAGAGTTCAACTAGCGAGGTTGACTCTAATTTTGACTTAAAAGAAGACTCACAAAAGCCTTTTGCTATGAATTCAAGGTGGCCAAGGTTGAGTGTGGGCAAAGAAGAATTCAGAAGCGACTCCGAGGGATTAAGAAATAGTCAGGATGTGAGAATCGGGGGCAGAGGTTCCTTGGGAAAGTATGATATTAAGACAAAGAGGAGGGTGATGCCGAAGCCATATGATGAGGAGAGTGATTTTGCAGAGCAGATTGAGTTCATTAGACATGAATTAAGTAAAAAGAGTGCAGCTGAAAACCGAGAAGAACAGGGTGAGGTGTCAATTTTTACAGAAAAAAGATTCGATGAATTCGCCGTATCTCCATTAACGGTCAAGGCACTCTCCTCTGCTGGCTATCTTCAAATGACTCGTGTACAAGAGGCCAGTCTTCCTATTTTCCTTGAGGCAGGCAAGGACGCATTGGTCAAAGCTAAAACTGGCACAGGGAAAAGTGCAGCCTTTCTGCTTCCTGCTATTGAAACAGTTTTGAAGGCTATGAGTAGCAGTACTAATGTGAGGGTTCCTCCAATATATGTTCTAATTATTTGCCCTACTAGAGAACTCGCAAGTCAAATAGCTGCCGAAGCAAATGTTTTCTTGAAGTATCATGAAGGCATAGGAGTGCAGACTCTAGTTGGGGGAACACGGTTTAAAGATGATCAGAAACGGTTTGAATCAAATCTTAGCCAGATAATAGTTGCGACTCCTGGTAGGTTGCTGGACCACGTCGAGAGTAGATCTTCGTTGTCTGTGCGTTTGATGGCGTTGAAAATGCTCATACTTGATGAAGCTGACCTTCTTTTGGACTTGGGTTTTCGAAAAGACATGGAGAGAATTGTTGATTGTTTGCCGCGCCGGCGGCAGTCACTCCTCTTGTCTGCTACTATTCCCAAGGAGGTACGAAGAATATCTCAGCTTGTTTTGAAAAGGGAACATGTTTATCTGGATACTGTTGGCCTTGGTTGTGTTGAAACTCATCCTAAGGTCAAACAATCCTATCTAATTGCACCGCATGAGTTACATTTTCAAATTGTGCACCATCTTCTGAAAGAACATACCTTACAAGTGCCAGATTATAAGGTTATTGTTTTTTGTACGACTGGGATGGTGACATCACTCATGTTTATACTTCTACGAGAGATGAAAATGAATGTTAGAGAGATCCATTCAAGAAAACCTCAACTTTATCGAACTCGTATTTCAGAGGAATTCAAGCAGTCAAACCGGCTGATTCTAGTTACATCTGATGTTTCAGCACGTGGAATGAATTATCCCGATGTTACTTTGGTCATACAGATGGGTATTCCATCTGATAGGGAGCAGTATATACATAGGCTTGGACGAACAGGACGGGAAGGCAAAGAAGGAGAGGGCATTCTGTTAATTGCACCATGGGAAGAACATTTCCTATTAGAACTGAAAAATCTGCCCCTTGAGAAACTTCATGTACCGCACGTCGATTTAGATTCAAAACTCAAGATTGAGAATTCAATGGCGAAAATTGATAGTAGCATAAAAGAGGGGGCATATCACGCTTGGCTTGGCTATTACAACTCAATAAGGGAAATTGGCAGAGACAAAACAACACTAGTTGAGCTTGCAAACAAATTTTCCGATTCAATTGGGTTAGAAAAGCCGCCTTCTCTGTTTCGGAAGACGGCAGTGAAGATGGGTTTGAGAGATATTCCTGGCATAAAACTCCGGAAGTAG 2406 42.73 MGGGPRTFPGGLNKWQWKRMHEKRAKEKERTLLEQEKQIYHARIRSQIRDKLSGKSDSLAEMEPSTSHEPMTPGDHIKALANRFMKEGAIDLWNESDGPLTMSEGQDFIESSGRSRSISSPMDGRKFISEKHHDSRNYDNLNLGKVNANYVKGRSYSVQSRRRCPRNESSSSDDEEDYGLEVDSVKAFSHKSARNMGNLRRMGIDGNVATKKRTSFNRPESSTSEVDSNFDLKEDSQKPFAMNSRWPRLSVGKEEFRSDSEGLRNSQDVRIGGRGSLGKYDIKTKRRVMPKPYDEESDFAEQIEFIRHELSKKSAAENREEQGEVSIFTEKRFDEFAVSPLTVKALSSAGYLQMTRVQEASLPIFLEAGKDALVKAKTGTGKSAAFLLPAIETVLKAMSSSTNVRVPPIYVLIICPTRELASQIAAEANVFLKYHEGIGVQTLVGGTRFKDDQKRFESNLSQIIVATPGRLLDHVESRSSLSVRLMALKMLILDEADLLLDLGFRKDMERIVDCLPRRRQSLLLSATIPKEVRRISQLVLKREHVYLDTVGLGCVETHPKVKQSYLIAPHELHFQIVHHLLKEHTLQVPDYKVIVFCTTGMVTSLMFILLREMKMNVREIHSRKPQLYRTRISEEFKQSNRLILVTSDVSARGMNYPDVTLVIQMGIPSDREQYIHRLGRTGREGKEGEGILLIAPWEEHFLLELKNLPLEKLHVPHVDLDSKLKIENSMAKIDSSIKEGAYHAWLGYYNSIREIGRDKTTLVELANKFSDSIGLEKPPSLFRKTAVKMGLRDIPGIKLRK 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 20408957 20413138 + BLOR09659 Blo19g00316 74457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00316 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 703 IPR027417 -
Blo19g00316 801 SMART ultradead3 350 564 IPR014001 -
Blo19g00316 801 SMART helicmild6 604 685 IPR001650 -
Blo19g00316 801 Pfam Helicase conserved C-terminal domain 578 684 IPR001650 -
Blo19g00316 801 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 12 800 - -
Blo19g00316 801 MobiDBLite consensus disorder prediction 210 226 - -
Blo19g00316 801 CDD SF2_C_DEAD 561 694 - -
Blo19g00316 801 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 546 IPR014001 -
Blo19g00316 801 PANTHER RNA HELICASE 12 800 - -
Blo19g00316 801 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 331 359 IPR014014 GO:0003724
Blo19g00316 801 MobiDBLite consensus disorder prediction 210 230 - -
Blo19g00316 801 Gene3D - 555 780 IPR027417 -
Blo19g00316 801 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 580 730 IPR001650 -
Blo19g00316 801 Coils Coil 18 38 - -
Blo19g00316 801 Pfam DEAD/DEAH box helicase 355 534 IPR011545 GO:0003676|GO:0005524
Blo19g00316 801 MobiDBLite consensus disorder prediction 154 178 - -
Blo19g00316 801 MobiDBLite consensus disorder prediction 45 73 - -
Blo19g00316 801 Gene3D - 308 548 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00316 - - - qsu:112029716 1031.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00240 Blo-Chr1:2954924 Blo19g00316 Blo-Chr19:20408957 0 dispersed
Blo01g01097 Blo-Chr1:38561695 Blo19g00316 Blo-Chr19:20408957 1.86E-20 dispersed
Blo19g00316 Blo-Chr19:20408957 Blo10g00825 Blo-Chr10:26084658 4.83E-49 dispersed
Blo19g00316 Blo-Chr19:20408957 Blo03g01343 Blo-Chr3:39798221 6.25E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g359 . . . . . . Bma07g01642 . . . Cma02g01094 . . Car15g01094 . . Cpe05g00622 . . . . . . . . . . . . . . . . . . . . . . . Blo19g00316 . Bda09g00047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007400 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 3 3 1 36