Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00321 ATGACTAGCCATCGGTGGAAGCCCAGGCGAGAATACGGTTGGCGTTTTGGAGAGAGAGCTCCGAAACAAGCTGAAGCAGCTATTGTTAATCCTTCAAAATTCTCGATTAGGGCTGCATTAGGGAGGGTTCGCGACATCAAGGAGTATATTCTGAACGGTGGAGATCGTCGTCTGAACTTTCTAAGGCAGTCTATTAAGGACGCTAGAGGAAATGATGTCGATCTCAGTTCTTACAAAGGAAAGGTCCTCCTGATCGTCAATGTTGCCTCTCAATGTGGCTTGACCAATTCAAATTACAAAGAGATGAGTCAATTGTACGAAAAATACAAAAATCAAGGACTGGAGATTCTGGCATTTCCATGCAACCAATTTGGAGGCCAAGAGCCAGGGAGTAATGAGAAGATAGTGGAGTTTGCTTGTACTCGCTTTAAGGCAGAGTATCCCATCTTTGACAAGGTGGATGTGAATGGCGAGAAAGCTGCTCCATTGTACAATTTCTTGAAATCAAGCAAAGGTGGGTGGCTTGGAGACGGTATCAAGTGGAATTTCTCTAAGTTCCTGGTGGACAAAGACGGGATGGTCGTCGACCGATATGCTCCAACGACTTCCCCGCTTAGCATTGAGGTGAAAGGATATAAAGAAGCTGCTTTGAAGACAATTACTGATCTGGGAATCTTCCTGTTTATGGGGTGGAATAAAAAGTAG 705 44.68 MTSHRWKPRREYGWRFGERAPKQAEAAIVNPSKFSIRAALGRVRDIKEYILNGGDRRLNFLRQSIKDARGNDVDLSSYKGKVLLIVNVASQCGLTNSNYKEMSQLYEKYKNQGLEILAFPCNQFGGQEPGSNEKIVEFACTRFKAEYPIFDKVDVNGEKAAPLYNFLKSSKGGWLGDGIKWNFSKFLVDKDGMVVDRYAPTTSPLSIEVKGYKEAALKTITDLGIFLFMGWNKK 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 20769820 20781868 - BLOR09664 Blo19g00321 74462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00321 234 Pfam Glutathione peroxidase 63 168 IPR000889 GO:0004602|GO:0006979
Blo19g00321 234 PRINTS Glutathione peroxidase family signature 179 188 IPR000889 GO:0004602|GO:0006979
Blo19g00321 234 PRINTS Glutathione peroxidase family signature 114 130 IPR000889 GO:0004602|GO:0006979
Blo19g00321 234 PRINTS Glutathione peroxidase family signature 78 95 IPR000889 GO:0004602|GO:0006979
Blo19g00321 234 PANTHER GLUTATHIONE PEROXIDASE 64 208 - -
Blo19g00321 234 Gene3D Glutaredoxin 55 212 - -
Blo19g00321 234 SUPERFAMILY Thioredoxin-like 62 208 IPR036249 -
Blo19g00321 234 ProSitePatterns Glutathione peroxidases active site. 80 95 IPR029759 -
Blo19g00321 234 ProSiteProfiles Glutathione peroxidase profile. 50 223 IPR000889 GO:0004602|GO:0006979
Blo19g00321 234 CDD GSH_Peroxidase 59 208 IPR000889 GO:0004602|GO:0006979
Blo19g00321 234 ProSitePatterns Glutathione peroxidases signature 2. 117 124 IPR029760 -
Blo19g00321 234 PANTHER GLUTATHIONE PEROXIDASE 64 208 IPR000889 GO:0004602|GO:0006979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00321 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - tcc:18606510 273.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00347 Blo-Chr5:4052253 Blo19g00321 Blo-Chr19:20769820 1.76E-71 dispersed
Blo06g00462 Blo-Chr6:25810197 Blo19g00321 Blo-Chr19:20769820 1.52E-65 dispersed
Blo12g01044 Blo-Chr12:28284416 Blo19g00321 Blo-Chr19:20769820 3.16E-67 dispersed
Blo19g00321 Blo-Chr19:20769820 Blo03g00360 Blo-Chr3:8092072 5.41E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g330 . . . . . . Bma07g01647 . . . Cma02g01460 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0773 Cone9ag0779 . Csa05g00289 Chy09g01217 . . Blo19g00321 . Bda09g00042 . . . Bma12g00393 . Cmo02g01495 . . . . . . . Bhi12g00245 . . . . . . . . . . . . . Lsi09g00266 . . Cme09g01754
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo19g00321 Blo_Chr19 FPKM 0.0 0.0 0.0 0.629419 0.0 0.5195 0.0 0.0 0.0 0.223623