Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo19g00330 ATGAGCGGACACGACTCCAAGTACTTCTCCACCACCAAGAAGGGAGAAATCCCTGAGCTCAAGGAGGAGCTCAATTCCCAGTACAAGGATAAAAGAAAAGATGCTGTCAAGAAGGTGATTGCTGCAATGACTGTTGGAAAGGATGTATCATCACTCTTTACAGATGTTGTAAATTGCATGCAAACAGAAAATTTAGAGCTGAAAAAGCTTGTTTATTTGTATCTTATTAATTACGCTAAAAGCCAACCTGATCTTGCAATACTTGCGGTGAACACATTTGTCAAGGATTCACAAGACCCAAATCCTTTGATCCGGGCTTTGGCTGTACGAACAATGGGATGCATTCGTGTGGATAAGATTACAGAATATCTTTGTGATCCCCTTCAGAGGTGCCTTAAGGATGATGACCCATATGTTCGCAAGACAGCAGCCGTTTGTGTTGCTAAACTTTATGACATTAACGCCGAGCTCGTTGAGGATAGGGGTTTCCTAGATTCCCTCAAGGACTTAATCTCAGACAATAACCCAATGGTTGTTGCAAATGCTGTCGCAGCTCTAGCAGAGATACAGGAAAACAGTAGTAGGCCAGTCTTTGAAATCACTAGTAACACACTCTCCAAGCTCCTCACCGCTCTAAATGAATGCACGGAGTGGGGTCAAGTTTTTATATTGGATGCACTTTCTAGATACAAGGCTGCTGATGCTCGTGAAGCTGAAAGTATAGTGGAGAGAGTTACTCCACGGCTACAACATGCTAATTGTGCAGTTGTTTTATCAGCAGTGAAGATGATTCTCCAACAAATGGAACTTATAACTAGCACTGATGTGGTTAGAAATCTTTGTAAAAAGATGGCTCCTCCTCTTGTTACTCTTCTATCTGCAGAACCTGAGATACAATATGTTGCATTGCGGAACATTAACCTTATAGTACAAAAACGACCTACAATCCTTGCTCATGAGATTAAGGTTTTCTTCTGTAAATACAATGATCCTATTTATGTGAAGATGGAAAAACTAGAAATCATGATTAAGCTTGCTTCAGACCGAAATATTGACCAGGTTTTATTGGAGTTTAAAGAGTATGCAACTGAAGTAGATGTAGATTTTGTAAGGAAAGCTGTTCGTGCCATTGGCCGATGTGCCATCAAGTTAGAGAGAGCAGCTGAGAGATGCATAAGTGTCTTGCTCGAGCTCATCAAGATTAAAGTGAACTATGTAGTCCAAGAGGCCATAATAGTCATCAAGGACATCTTTCGGAGATACCCTAACACATATGAGTCTATCATTGCTACGCTGTGTGAAAGCTTGGACACTTTAGATGAGCCGGAAGCTAAGGCGTCAATGATCTGGATTATTGGTGAATATGCGGAAAGAATTGACAATGCAGATGAACTCCTTGAAAGCTTCCTGGAGAGTTTTCCTGAAGAGCCTGCTCAAGTCCAGTTGCAATTGTTGACAGCAACCGTCAAACTTTTCCTTAAGAAACCAACTGAAGGTCCACAGCAGATGATTCAGGTTGTTTTAAATAATGCTACAGTTGAAACAGACAATCCTGATTTACGTGATCGTGCATATATTTATTGGCGACTCCTATCAACTGATCCTGAGGCAGCTAAGGATGTTGTTCTGGCTGAGAAGCCGGTAATCAGTGACGACTCAAACCAGCTTGATTCCTCTCTTCTTGATGAACTCCTTGCCAACATTGCTACTCTGTCCTCTGTGTATCATAAACCACCGGAAGCATTTGTGACCCGTGTAAAAACCACAACCCAGAGAAATGATGATGAAGATTATCCTGAGGGGAGTGAAACTGGGTATCCCGAATCACCAGCTCAATCTTCTGGCAGTGGCACATCACCTCCTACTAGTTCAACTAGTGCATCATATTCCACAGCAAGGCAATCTGCCCCTGTTCCAGCTCCACCCCAACCTCAACCTCAGGCTCCAGTGCCAGATTTGCTTGTTGATTTGATTGGATTGGATAACAATGCTATTGTCCCTGTTGATCAACCTGTTGCTACTCCTGCTGGTCCCCCTGTACCTGTTCTGCTTCCAGCAGCAGCTGGTCAAGGCTTGCAAATCAGTGCACAGTTGATCCGCCGGGATGGTCAAATATTCTACAGTTTATTGTTTGAGAATAACTCTCAGATTCCATTAAATGGATTTATGATCCAGTTCAACAAGAATACCTTTGGCCTCGCAGCTGCTGGAGCCCTCGAGATTCCACAGCTGCAACCTGGGACGGCAGCCAGTACTCTCCTGCCTATGGTTATGTTTCAAAACCTATCTCAAGGGCCCCCAAGCTCAGTCTTACAGGTTGCAGTGAAAAACAATCAGCAGCCAGTGTGGTATTTCACTGATAAAATCTCGTTTCATGTGTTCTTTACTGAAGATGGAAAAATGGAGCGTGCAAACTTTCTCGAGACATGGAGGTCTCTCCCTGATTCCAACGAAGTCTCCAAGGATTGCCCGGGAATTGTAATAAACAATGTTGAAGCTACACTCGAACGACTTGCCTCGTTAAACTTGTTCTTCATCGCGAAAAGAAAAAACACAAACCAGGATGACGTATTCTACTTCTCTGCCAAAATCCCGAGAGGTATTCCTTTGCTTATCGAACTCACGACGCTCATTGGCACTCCTGGCGTGAAATGTGCTGTCAAAACCCCAAGCACTGACATGGCTGCCCTTTTCTTCGAGGCCATTGAGACTATCCTGAAAGAATGA 2727 43.38 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAVCVAKLYDINAELVEDRGFLDSLKDLISDNNPMVVANAVAALAEIQENSSRPVFEITSNTLSKLLTALNECTEWGQVFILDALSRYKAADAREAESIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDSSLLDELLANIATLSSVYHKPPEAFVTRVKTTTQRNDDEDYPEGSETGYPESPAQSSGSGTSPPTSSTSASYSTARQSAPVPAPPQPQPQAPVPDLLVDLIGLDNNAIVPVDQPVATPAGPPVPVLLPAAAGQGLQISAQLIRRDGQIFYSLLFENNSQIPLNGFMIQFNKNTFGLAAAGALEIPQLQPGTAASTLLPMVMFQNLSQGPPSSVLQVAVKNNQQPVWYFTDKISFHVFFTEDGKMERANFLETWRSLPDSNEVSKDCPGIVINNVEATLERLASLNLFFIAKRKNTNQDDVFYFSAKIPRGIPLLIELTTLIGTPGVKCAVKTPSTDMAALFFEAIETILKE 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21899238 21907714 + BLOR09673 Blo19g00330 74471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo19g00330 908 Gene3D - 677 789 IPR013037 GO:0006886|GO:0016192
Blo19g00330 908 MobiDBLite consensus disorder prediction 606 636 - -
Blo19g00330 908 Pfam Adaptin N terminal region 15 533 IPR002553 GO:0006886|GO:0016192|GO:0030117
Blo19g00330 908 SMART alpha_adaptinc2 672 786 IPR008152 GO:0006886|GO:0016192
Blo19g00330 908 Pfam Adaptin C-terminal domain 690 785 IPR008152 GO:0006886|GO:0016192
Blo19g00330 908 SUPERFAMILY ARM repeat 8 581 IPR016024 -
Blo19g00330 908 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 1 906 IPR026739 GO:0016192
Blo19g00330 908 Gene3D - 4 592 IPR011989 -
Blo19g00330 908 SUPERFAMILY Clathrin adaptor appendage domain 678 792 IPR013041 -
Blo19g00330 908 MobiDBLite consensus disorder prediction 585 650 - -
Blo19g00330 908 Gene3D - 791 908 IPR012295 -
Blo19g00330 908 Pfam Beta2-adaptin appendage, C-terminal sub-domain 796 906 IPR015151 GO:0006886|GO:0016192|GO:0030131
Blo19g00330 908 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 794 907 IPR009028 GO:0006886|GO:0016192|GO:0030117
Blo19g00330 908 SMART B2_adapt_app_C_2 795 907 IPR015151 GO:0006886|GO:0016192|GO:0030131
Blo19g00330 908 PIRSF Beta_adaptin 1 737 IPR016342 GO:0015031|GO:0030276
Blo19g00330 908 PANTHER BETA-ADAPTIN-LIKE PROTEIN B 1 906 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo19g00330 K12392 AP1B1; AP-1 complex subunit beta-1 - jre:108997380 1536.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00012 Blo-Chr5:136651 Blo19g00330 Blo-Chr19:21899238 4.78E-16 dispersed
Blo06g00770 Blo-Chr6:30993799 Blo19g00330 Blo-Chr19:21899238 2.46E-18 dispersed
Blo19g00330 Blo-Chr19:21899238 Blo04g00508 Blo-Chr4:4305496 2.29E-06 dispersed
Blo01g01708 Blo-Chr1:56840254 Blo19g00330 Blo-Chr19:21899238 1.43E-103 transposed
Blo13g00765 Blo-Chr13:30388934 Blo19g00330 Blo-Chr19:21899238 5.61E-26 transposed
Blo19g00330 Blo-Chr19:21899238 Blo03g00342 Blo-Chr3:7392899 2.20E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g18 . . . . . . . . . . Cma02g01437 Cma15g01240 Car02g01205 Car15g01117 . . Cpe05g00350 . . . . . . . . . . . . . . Cone8ag0289 Cone12ag0295 Cone6ag0794 . . Csa05g00264 Chy09g01244 . . Blo19g00330 . . . . . . . Cmo02g01471 Cmo15g01305 . . . . . Cpe13g00145 Bhi12g00287 . . Lac11g2070 Hepe06g1527 . Lcy12g1632 Cla01g00248 Cam01g0252 Cec01g0245 Cco01g0258 Clacu01g0250 Cmu01g0240 Cre09g2268 Lsi09g00238 . . Cme09g01779
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002730 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 4 1 57