Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00007 ATGCAGAGAAAAAAGAAAAATTCTGGAAGAAATGGTTCACGAGAACTCGCCAATTCCAAGGTCTCAAGAGCTCAAAGGAAGGTTTCAGAGAGTTCACAGGTCACAGAAAAGAATGTATCGGAACTAATTGCATCTTCAGCTAGAAAACAGGCTCGTGGTAAGCTACTATCCTCTCCTCTTTTGAATAATCTATCTTTTCTCCTTCTTTTCACATATCTAAACATGCCGAAGATGACATGCCTGAGGGAGGTAGATAAAAGTTGTTTTCAAATAATAATGGAATTATTTAGCTGTATCATTAATTACTCGCTTTTACATTCTTATGGTTACTACCAATTCACAATTGGTTTTCTCTTTTGTTTTCTGCTAGTTGCATTTATTAAGTTCTTTCAGAGTGGAGATCAGAAATTCCATCGAGATAGTGGATTAATGAATGCAGAGTTTGATGGTGATGCCGGCCAACAAACTTCTAATTTGATTATTGGGCAAGAGATGAATATTGGAGATTCCACGCTGGCTTCAATCGGAGTGACGTTTTCTGAATTAGAGGGAGAAGCTTTATCATCGGAAGTCTCAGCGATATATCTGGCTATGAAAAACTCTAGGCTGGAATGCGTTGATGAGCATGATCAAAATCACCTTTCTACTGAAGGATACATGCAGGAGGATGAAGATGAAGAGTTTGATGATTTTGATCCTTATTTCTTCATCAAGAACTTGCCAGCGTTGGCAGCATTAGTCCCAACTTATCGTCCTCTGCTTCTACCCAAACAGACACGGAGTTGCCCTCCCACTACTCTTGTTTTAGACTTGGATGAGATGAAGATCAAGAAGCTTATGCCGATGGATGCAGAATCTCGCAGACTGATAGACTGGATGGAAAAAGGCGTATATGACGCATTGCAGAAAAAGTACCTTAAAACTCTTCTGTTCTGTGTGTGCGAAGCTGTAGATGGTCCAATGATTGAGGAATATGCATTTTCATTCAGTTATTCAAGTTCCGATACTGAAGAGGTTTCAATGAATATCCATCGCACTGGTAACAAGAGACAGGGTGAAGCATTCAAATGTAACTCCACCTCAGAAATTACACCCAACCAAATGAGGAGTTCTGCATGTAAGATGGTGCGTACACTAGTTCAACTTATGAGAACTCTGGATAGGATGCCTGAAGAGCGTGCTATATTGATGAAACTTCTCTACTACGATGATGTTACGCCAGTGGATTATGAACCTCCATTTTTCAGATGCTGTATAGAGGGCGAAGCTCATAATCCATGGGCTAGAAATCCTCTGAAAATGGACGTTGGGAATGTCAACAGCAAGCATTTTGTATTGGCTCTTAAAGTACAGAGTATACTTGATCCGTGTGACGATGAAAATGATGAGATAGAAGATAATGAAGTGAGTCTAGGAGCTGATTCTGTTGAGAAGGGAGAATATTCTGAATCTGATAGCGAGGTTGATCATTTACCAGACGACAATTATGTTGTAGCACCAGTTGGTAGATTACATAAAGCTCAGCGTACGGGTTATTGTAACTTTACTTATTTATGTGCAGATGATACTCAGGATCCAGAGGAAAATGAACAGCAGATGAACCGAGTGAAGGATTGGATCCAGAATCGCCACCTGGACACCATAGAACTAACAGATATTCTGTCGCATTTCCCAGACATCTCAGTGTGGATGATTCCAGAAATAATGGATAAGCTAGTTAATGAAAGTTTTCTGTCAAAGACTCGAATGGACTCATATACGATTAACAGGCATAAGAAGTTCGACTATGAATTTACAACTGTCAAAGATGAAACGGATGGTCAAATAATTCCCGTTGGTGACAAAGCTCCAAAAGGAGATGATCTCCTGTATACGAAGGCTCTGTATCATGCTCTTCCGATGAAATATGTGACTGTTGCAAAACTTCAAGCTATGCTTGAAGGAGAGGTTAATCAGACTACTGTGCGAAAATTAATTGATAAAATGACCCGAGATGGTTTTCTTGAAGCCAAAGGAAATCGACGGCTAGGTGCATGCCAAATTGAAACATTTAGACTTAGTTTTCCCATACTAAAGAAAAAATGGGTTAACATTTTGCAACTTGCTCGCACAGGCAAGCGTGTAATTCATTCTGATATGACCGAGAAAAAGCTAATGGAAGTAAAGATAGCTTTAAACGACGACGCAATGGAAGTCGACAAGGAACCTCATAAGAGGCCATACCATCGAGATATCTCCACAATGGGTTCCGGTAGTAACTACAAAGACATGTCTACATGCGGCCTCCTCCATTCCATAGGATCAGACCTCACACGTATGAAAGTGAGATCTGACACTGTGGAAAATGATTCGATGAGGAGTGAACAGACTATTTCAAAGCTTGGAAACACTCCTACGAGCAGGGATGAGCCAGTGACTTCAAGAGAGAGCTTTGTACCGGGGAATGAGTTGAACAGAGACAATAGAAATGTAGATGAGGTGGATATGGTTATCTGTAGATCAACTCAAGACAAGCGGTCAAGGAAGACGAGCACTGTGAACTCATACCCAACAGTTAGAGGGTTTACAGCAATAGGAACTGGCGGCGATGATTTTGTGCAAGCAATGGTCGTTGCTGTTGAATCTGTAATCAAACAGCCAATTCCCGAGGGGCGAGTGAGGCAGAAGTTATCATCAAGGGGAAAATATGTGTCGGTCAACATAGGACCAGTTCAAGTAATTTCCAGTGAGCAGGTCCAAGCTGTATATAACGCCATGCGGAGAGATGATAGGATGAAATACTTTCTCTAG 2790 40.93 MQRKKKNSGRNGSRELANSKVSRAQRKVSESSQVTEKNVSELIASSARKQARGKLLSSPLLNNLSFLLLFTYLNMPKMTCLREVDKSCFQIIMELFSCIINYSLLHSYGYYQFTIGFLFCFLLVAFIKFFQSGDQKFHRDSGLMNAEFDGDAGQQTSNLIIGQEMNIGDSTLASIGVTFSELEGEALSSEVSAIYLAMKNSRLECVDEHDQNHLSTEGYMQEDEDEEFDDFDPYFFIKNLPALAALVPTYRPLLLPKQTRSCPPTTLVLDLDEMKIKKLMPMDAESRRLIDWMEKGVYDALQKKYLKTLLFCVCEAVDGPMIEEYAFSFSYSSSDTEEVSMNIHRTGNKRQGEAFKCNSTSEITPNQMRSSACKMVRTLVQLMRTLDRMPEERAILMKLLYYDDVTPVDYEPPFFRCCIEGEAHNPWARNPLKMDVGNVNSKHFVLALKVQSILDPCDDENDEIEDNEVSLGADSVEKGEYSESDSEVDHLPDDNYVVAPVGRLHKAQRTGYCNFTYLCADDTQDPEENEQQMNRVKDWIQNRHLDTIELTDILSHFPDISVWMIPEIMDKLVNESFLSKTRMDSYTINRHKKFDYEFTTVKDETDGQIIPVGDKAPKGDDLLYTKALYHALPMKYVTVAKLQAMLEGEVNQTTVRKLIDKMTRDGFLEAKGNRRLGACQIETFRLSFPILKKKWVNILQLARTGKRVIHSDMTEKKLMEVKIALNDDAMEVDKEPHKRPYHRDISTMGSGSNYKDMSTCGLLHSIGSDLTRMKVRSDTVENDSMRSEQTISKLGNTPTSRDEPVTSRESFVPGNELNRDNRNVDEVDMVICRSTQDKRSRKTSTVNSYPTVRGFTAIGTGGDDFVQAMVVAVESVIKQPIPEGRVRQKLSSRGKYVSVNIGPVQVISSEQVQAVYNAMRRDDRMKYFL 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 231797 245324 - Bma000178.1 Bma01g00007 74524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00007 929 MobiDBLite consensus disorder prediction 12 33 - -
Bma01g00007 929 SUPERFAMILY The spindle assembly checkpoint protein mad2 273 457 IPR036570 -
Bma01g00007 929 MobiDBLite consensus disorder prediction 784 817 - -
Bma01g00007 929 Gene3D - 840 929 - -
Bma01g00007 929 Gene3D HORMA domain 236 494 IPR036570 -
Bma01g00007 929 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 272 681 - -
Bma01g00007 929 MobiDBLite consensus disorder prediction 1 33 - -
Bma01g00007 929 Pfam Protein of unknown function (DUF493) 845 929 IPR007454 -
Bma01g00007 929 PANTHER MEIOSIS-SPECIFIC PROTEIN ASY1 272 681 - -
Bma01g00007 929 PANTHER MEIOSIS-SPECIFIC PROTEIN ASY1 705 847 - -
Bma01g00007 929 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 705 847 - -
Bma01g00007 929 ProSiteProfiles HORMA domain profile. 231 450 IPR003511 -
Bma01g00007 929 MobiDBLite consensus disorder prediction 779 820 - -
Bma01g00007 929 Pfam HORMA domain 272 443 IPR003511 -
Bma01g00007 929 SUPERFAMILY YbeD/HP0495-like 842 929 IPR027471 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00007 K12778 HORMAD, HOP1; meiosis-specific protein - jre:109003178 726.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00007 Bma-Chr1:231797 Bma14g01871 Bma-Chr14:40071710 3.54E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1253 . . Bda01g02177 . . . . . Cmo04g01936 . . Cma18g00692 . Car18g00641 Sed04g0293 Cpe09g00593 Cpe01g01619 Bhi07g01930 Tan04g0042 Cmetu10g0783 Lac13g0048 Hepe10g1511 . . . . . . . . . . . . . . . . Cme10g00667 . . . . . . Bma01g00007 . . . . Cma04g01839 . . . . . . . . . . . . Cla11g01333 Cam11g1392 Cec11g1414 Cco11g1410 Clacu11g1550 Cmu11g1371 Cre11g1789 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002827 1 3 1 1 2 1 3 1 1 1 1 1 2 2 2 2 1 3 2 1 1 2 2 2 1 2 2 4 5 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00007 Bma_Chr01 FPKM 10.442059 12.402837 13.524415 11.25994 15.681691 16.522787 15.794593 12.670382 11.652977 12.544371