Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00013 ATGCCGATCGCTTCCTTTTCGTTACTCCGCCTCCGCATCACCTCCTTCTCCCCTCTCCCCTCATCCGCAAGCTTCCTGCGTCGCCTCTCAATTTCCGCCAAACAACACCAAAACCCTACAAAACCTCAGCTCAATAAGAACATTCTGAGGGCCAGAAACACCTTCAAGGACTTCTCCTCCCTCGCCCCGATTCTGTCTCCTGATAACAATTCTCCTCTCTCCGAATCTCAAGCCATTGGAACTGTTGCCGCCGCCCAAGCCAACTTCATGCGCGTTATCGTGCAGTCGCAAGTTTCGAATTCAGCGGAGGAAGGTTCGAGAGTCGGACTTGAGTTGTTGTGCGTCGTGAAAGCGGTGCTGAAGAAGATAAAGAGAAGGGTTCTAGTGGGGGACAAGGTGGTTGTGGGCTCCATTGATTTTGTGGATCGGAGAGGCGTGATCGAGAATGTCTTCCAGAGAAGCTCCGAGACTCTTGATCCACCAGTGGCCAATGTCGACCATTTACTCCTCCTCTTCTCGTTGGAGCACCCAAAACTAGAGCCTTTCTCACTCACCAGGTTTCTTGTAGAGGCTGAGTCCACCCATATTCCACTCACTCTTGCTCTCAATAAGTCGGAACTTGTTGACGAGGAGACTATGGTGAACTGGAAATCTAGGCTGCAAAAGTGGGGATACGAACCACTGTTTTGCAGTGTTGAAACCAGAAGTGGACTCGATTCCCTCGCATTCATTTTGAGAGATCAAACAACTGTCATCGTTGGTCCTAGTGGAGTTGGGAAATCAAGTCTGATTAATGCTCTTAGAAACCATAACTCTGCTGCTGCTCCTGTAGAGGGTGATAATTGGTTTGAACCTGTGCCTTTACGTTCTGTTCCGTTTATTACACCTGCTCAGATTTTAGGCAGCAAGTGGTTTCAAGAACAGCGAGTTGGGGAAGTCTCTACGAGAAGTGGCAGAGGGAAGCACACCACTCGCCATGTTTCTCTGCTTCCATTATCTGAAGGGGGTTACCTTGCCGACACTCCTGGATTCAACCAGCCTAGTTTGTTGAAAGTGACAAAGCAGTCTCTTCCTCTTGCTTTCCCAGAGATACGGAAGATGCTCGGTGCCAGCGAAGCTGCAAGATGCTCGTTCAAAGATTGCTTGCATCTAGGAGAACCGGGATGCATTGTTAAAGCCGATTGGGAAAGATATCAGTACTATTTTCAACTTGTTGACGAAATTAGGGTGAGGGAAGAGTTTCAGCTGAGGACATTTGGAACGAAAAGAGAGGGCGATGTAAGGTACAAGGTTGGAGACATGGGTGTTCAACAAGCAGAACCAAGGTTGGAGCCCAAAAAGCATAGGAGACAATCTCGCAAGAAACTGAACCAGTCATTACTGGATGAGTTGGATGAGGAAAATGATGAGTTGGATGAGGAAAATGATCCAATTATGTGGGCAACGAGGAATGAAAGCCATTAG 1464 48.16 MPIASFSLLRLRITSFSPLPSSASFLRRLSISAKQHQNPTKPQLNKNILRARNTFKDFSSLAPILSPDNNSPLSESQAIGTVAAAQANFMRVIVQSQVSNSAEEGSRVGLELLCVVKAVLKKIKRRVLVGDKVVVGSIDFVDRRGVIENVFQRSSETLDPPVANVDHLLLLFSLEHPKLEPFSLTRFLVEAESTHIPLTLALNKSELVDEETMVNWKSRLQKWGYEPLFCSVETRSGLDSLAFILRDQTTVIVGPSGVGKSSLINALRNHNSAAAPVEGDNWFEPVPLRSVPFITPAQILGSKWFQEQRVGEVSTRSGRGKHTTRHVSLLPLSEGGYLADTPGFNQPSLLKVTKQSLPLAFPEIRKMLGASEAARCSFKDCLHLGEPGCIVKADWERYQYYFQLVDEIRVREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKKLNQSLLDELDEENDELDEENDPIMWATRNESH 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 290864 292899 - Bma000184.1 Bma01g00013 74530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00013 487 Gene3D - 71 150 IPR012340 -
Bma01g00013 487 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 155 347 IPR030378 GO:0005525
Bma01g00013 487 Gene3D Probable gtpase engc; domain 3 351 413 - -
Bma01g00013 487 Gene3D - 151 349 IPR027417 -
Bma01g00013 487 SUPERFAMILY Nucleic acid-binding proteins 78 153 IPR012340 -
Bma01g00013 487 Pfam RsgA GTPase 150 349 IPR010914 GO:0003924|GO:0005525
Bma01g00013 487 Coils Coil 454 474 - -
Bma01g00013 487 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 78 412 IPR004881 GO:0003924|GO:0005525
Bma01g00013 487 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 68 470 - -
Bma01g00013 487 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 68 470 IPR004881 GO:0003924|GO:0005525
Bma01g00013 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 408 IPR027417 -
Bma01g00013 487 MobiDBLite consensus disorder prediction 433 487 - -
Bma01g00013 487 CDD YjeQ_EngC 163 406 IPR004881 GO:0003924|GO:0005525
Bma01g00013 487 ProSiteProfiles EngC GTPase domain profile. 163 345 IPR010914 GO:0003924|GO:0005525
Bma01g00013 487 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 127 271 IPR004881 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00013 K06949 rsgA, engC; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] - qsu:112011642 683.715
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1221 Blo01g00361 . Bda01g02182 . Bpe13g00529 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00013 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010562 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00013 Bma_Chr01 FPKM 21.21319 23.148479 37.487427 37.316353 59.591808 60.530533 63.375175 69.828072 66.772697 67.15593