Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00015 GTGCCTGGTTTTGTGCTTGGAACAAAGAGGTACACAGAGCCAAATATGTGTTTTTCCGACTCTATCAAACAAGATGCACTGATTCTTTCAAAAAGCAGATGTGGTTTAACTTCTCGGGTTGATAATTATGAGTTTGAGAGCCCGCTCATACCAGGGCTTCCTGATGATGTGGCAAAGTATTGCTTTGCTCTTGTTCCCAGGTCTAATTTTCCTGTAATGGGCGGTGTTTGTAAAAGGTGGAGGTCATTTCTTCAAAGCAAGGAATTTATTACTGTGAGAAAATTAGCTGCCATGGTAGAGGAATGGCTTTATTTTTTAATTACGGATGCTGAAGGAACAAAATGCCAGTGGGAAGCTCTAGACTGTTCTGGAAATAAACACCAGATACTTCCTTTAATGCCTGGTCCAGTGAAAGCCGGATTTGGGGTCGTTGTACTCAATGGGAAACTTCTTGTCATGGCTGGTTATTCAGCAATTGGTGGAACAGGCTCTGCCTCAGCAGATGTTTATCAATATGATTCTTGCCTTAACAAGTGGAGCAAATTAGCAGGTATGAATGTGGCTCGATATGATTTTGCCTGCGCTGAAGTCAATGGCATGGTTTATGTGATCGGAGGTCGCGGAATGAAAGGTGATAGTCTCTCCAGCGCTGAGGTGTACGACCCAGAAAGAGATGAGTGGAGTGTGATCGAGAGTCTACGCCGGCCAAGATGGGGCTGCTTTGCATGCGGATTCGAGGGAAAGTTGTACGTGATGGGGGGAAGGTCAAGTTTCAGGATTGGGAATTCAAAGTTTATAGACGTGTACAACCCGGAGAAGCAGAGCTGGGGTGAGATGAAAAACGGTTGTGTCATGGTCACTGCACATGCTGTAGTTGGAAAGAAACTCTTCTGTATGGAGTGGAAGAACCAGCGGAGACTGGCCAGTTTTAACTCAGACGACACGTCGTGGAAGATGGTGGCTGTTCCGTTGGGAGGTAGCTCCAGCGTGGGATTCAGATTTGGGATACTAAAGGGGAAGCTTCTGTTATTTGCAATGGAGGAAGACCCCACCTACACAACCCTATTGTATGATCCAAATGCAGCCCCAGGCCTGGAATGGCATACTAGTGATATCAAGCCATCTGGCTTGTGCTTGTGCTGTGTGACAATCAAGGTGTAG 1161 46.08 VPGFVLGTKRYTEPNMCFSDSIKQDALILSKSRCGLTSRVDNYEFESPLIPGLPDDVAKYCFALVPRSNFPVMGGVCKRWRSFLQSKEFITVRKLAAMVEEWLYFLITDAEGTKCQWEALDCSGNKHQILPLMPGPVKAGFGVVVLNGKLLVMAGYSAIGGTGSASADVYQYDSCLNKWSKLAGMNVARYDFACAEVNGMVYVIGGRGMKGDSLSSAEVYDPERDEWSVIESLRRPRWGCFACGFEGKLYVMGGRSSFRIGNSKFIDVYNPEKQSWGEMKNGCVMVTAHAVVGKKLFCMEWKNQRRLASFNSDDTSWKMVAVPLGGSSSVGFRFGILKGKLLLFAMEEDPTYTTLLYDPNAAPGLEWHTSDIKPSGLCLCCVTIKV 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 295468 296798 + Bma000186.1 Bma01g00015 74532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00015 386 Pfam Kelch motif 237 280 IPR011498 GO:0005515
Bma01g00015 386 PANTHER OS02G0202900 PROTEIN 1 385 IPR045887 -
Bma01g00015 386 Gene3D - 86 383 IPR015915 GO:0005515
Bma01g00015 386 SUPERFAMILY F-box domain 45 111 IPR036047 GO:0005515
Bma01g00015 386 SUPERFAMILY Kelch motif 100 358 IPR015915 GO:0005515
Bma01g00015 386 Pfam F-box domain 52 89 IPR001810 GO:0005515
Bma01g00015 386 PANTHER KELCH REPEAT F-BOX PROTEIN 1 385 - -
Bma01g00015 386 Pfam Kelch motif 188 233 IPR006652 GO:0005515
Bma01g00015 386 Pfam Kelch motif 139 186 IPR006652 GO:0005515
Bma01g00015 386 SMART kelc_smart 149 199 IPR006652 GO:0005515
Bma01g00015 386 SMART kelc_smart 200 247 IPR006652 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00015 - - - zju:107434009 626.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00015 Bma-Chr1:295468 Bma07g00228 Bma-Chr7:2681798 1.38E-31 dispersed
Bma14g00800 Bma-Chr14:8947454 Bma01g00015 Bma-Chr1:295468 1.40E-16 dispersed
Bma01g00015 Bma-Chr1:295468 Bma15g00165 Bma-Chr15:1734669 2.95E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1219 Blo01g00180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00015 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008669 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 0 1 1 4 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00015 Bma_Chr01 FPKM 8.986292 8.098094 2.297273 2.028111 1.300995 0.932948 1.527063 1.768491 2.251167 2.433834