Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00019 ATGGTTCTTGGTCTGAGAACAAGGACTCAAAAAAGTATTTCAGTTCAGATCGATTACCTCATCAATGTACTCGAGATTCATCCATGGACCTCTTCAGATGCTCGGACATCCGCCCAGTCCGTATTGCTTCAATGTGAAAACGGAGGTGAAAGTTGGGGGATCTTTGTATCATCTATTGGAGATGGCAAGATTGACTTCAGCAAGGCTTTCAGACTCACTGTAACTTTACTCAAGGAAGTATCCAAAAAAGGTGCATCTCGCGATGGTTTCCAGAATAACTTCTTGGAGTTTCACTTGTACGAAGTACGCAAGGAGAAGAAGGGGAAGCTCTTGGGATCAGCTGCAATCAATCTTGCAGATTATGCAATTATCAGTGATAATGTAGCCTTGAACGCTCCTGTATACTTGAAGAAGACTTCTAAACATTCTGCACAACCAATACTTCATGTTAATATACAGACTCTTGATAAGGATAACTCTAGCTCTCCGCCCGAGAACAGCTTGTCAAAAGAAATGTCGGCAGCTGGATCTGTTTCACAGTTGATAGATGGAGGCAACGACAATGAAGCTGAAATTGCCTCATTTACAGATGATGATGATGATGGTTCTTCCTTGCATTCAACCCGGACAATCTCTACTCTTGAGACTACAATGGCATCACCCACTGATGTGGAATCGGGTAGTGATTGTGCAGATAGAAATAGATTGGCTGAGGCCGTCAGACATCTGAACGGTAGTTCATCCAGAACAGTTTCATCATCAGACATTCTGTCGGGCACGGAGCTTTTAGGATGCAGCTCAAATATTTCATCCGAACCACCAGTGGAGAGTGAAAGGGTTGCTGATGATAGCACTAGAATTCAAGAAACAATGACACAAGGTGATAATGGTGGCATCACTAACAGCCTTATTGGTAAAACCTCCGAAGATGATGTTCAGTCAGTTTTGAATGCAATCTTTTCTGATTCTAAAACTAATCGGGAGGTTGATAGGAGACAAATCAAAGCAGACGAAGAGAAATGCATGTCTGGTGCCTTAAATTCGGCTTCTTTTGGAGACGAGAAACAAGAGCAACAAGAATGTGTTGAGGCAGAATCAGTTTCAGAGATCGACAACCAAATGGCTCGGAAAATACCGGTAGATGCTGTCAGGAAGCTAGAAAAATTGAGTGATAATGTTGCATCGAATATGAATACCCTCGGCATACATGGAGGCGGTCGTAGGAATGATAAATTAAAGCATTTGAAGTCTCTTCAGTTGACTTTTGACTCTTCTAAGATTGATGGAATTTATGCCATTGATTTGATTAATAATCACAAAAAGAATGACGTTTTGGAAAATGCTCCTAAAATTTCAGTCACTAACGACAGTGACAAGACAGGCAGACATCAAGCTAAAGATGATGAAAAAGGTAATGATCTGTCAGAGACCACTATCTGTTCTATGACCACTGTTAATGATGAGAAGATCAATTACAATAGCAAACTCTCAGACAGCAAGACTGGTCTGGAATCTGAAGTTGAAATGCTTCGAGAGGAGCTCAGAGAAGCTGCAGCTGTTGAGATTTCACTTTATTCCGTTGTCGCTGAACATGGGAGTTCGGCTAATAAAGTACACGCTCCAGCAAGGCGCCTTTATAGGTTCTACTGCCATATTTTCAGTTCAAAGTCTTCCAGCTCACTGGCTAGTGCTGCTAGGACAATTGTATCCGGATTAATGTTAGTTTCGAAATCATGTGGACATGACGTCCCCAGATTGACCTTTTGGTTGTCTAATGCAATTTTGTTGAGAGGAATGATCAAAAATGCTGTTGAGAAATCGCAAATCTCTAAAAATAGCAATGCTGAAGAAAATTTAGATGACTGGGATGAACCCCAAACACTTGTTACGGCAGTGGAAAAGGTTGAAGCTTGGATATTTACTCGAATTGTGGAGTCTGTGTGGTGGCAGAGTCTGACTCCATACATGCAGTCTGCAGCTTCTAAAGGCTCAAGCTCAAGAAAAACATCTGGAAAAAGATATGTTATAGGTGATCAAGATCAGGGTAAATTTTCTATAGATCTATGGAAGAAAGCTTTTACCGATGCTGGTGAAAGGATTTGTCCTCTTCGAGCAGGAGGGCATGATTGTGGGTGCTTGCATATTATCACTAGATTGTTGATTGAACAACTGGTGAGTAGACTTGATGTTGCAATGTTCAATGCTATTCTTCGAGAATCGGCCGATGAAATGCCGACAGACCCTTTTTCTGACCCTATAAGTGATTCCAAGGTTCTCCCAATTCCTGCAGGAAAATCAAGCTTTGGTTCTGGTGCACAGCTGAAAAATGCTGTTGGAAACTGGTCGAGATGCCTTGCAGATTTATACGGCATTGATGATAGTGATTCTCTTGGAAATAGAAATGAACTTAATGATAATCACGAGGCGGCACCTTTCAAGGTTTTCAACCTCCTCAATGCTTTGAGTGACCTTATGATGCTTCCGTTTGAAATGTTGGCGGAACGGTCCACCCGAAGAGAGGTATGCCCCAACTTGGGAGTTCCCTTGATCAGAAGAGTTCTTACCAATTTTGTTCCAGATGAATTCTGCCCATCCCCAGTTCCAGAAGCTCTTCTTGACGCCCTTGATTCTGAGGACTGCATTGAAGGTGATGAAAAGTCTGTTGCAAGTTTCCCTTGCATGGCCTCACCCACCATCTATTCACCACCATCAGCTTCGTCATTAAGAGAGGTTGGGAGTGTAAGTAGTGGCTCGCCAATGCTTCGAAAATCATACACCAGCGACAATGAGCTTGACGAGTTGGATTCACCCTTAAATGCTCTTATAATTGAAAAAACACGCAGTTCCCCAACTTCGACAGGTTCCAATTTGCTGCCGAAGGAAATGGGTGGTCGTAGAGTCGTCAGATATGAACTTCTACGAGAAATATGGGGGGATAATCACTAG 2946 42.36 MVLGLRTRTQKSISVQIDYLINVLEIHPWTSSDARTSAQSVLLQCENGGESWGIFVSSIGDGKIDFSKAFRLTVTLLKEVSKKGASRDGFQNNFLEFHLYEVRKEKKGKLLGSAAINLADYAIISDNVALNAPVYLKKTSKHSAQPILHVNIQTLDKDNSSSPPENSLSKEMSAAGSVSQLIDGGNDNEAEIASFTDDDDDGSSLHSTRTISTLETTMASPTDVESGSDCADRNRLAEAVRHLNGSSSRTVSSSDILSGTELLGCSSNISSEPPVESERVADDSTRIQETMTQGDNGGITNSLIGKTSEDDVQSVLNAIFSDSKTNREVDRRQIKADEEKCMSGALNSASFGDEKQEQQECVEAESVSEIDNQMARKIPVDAVRKLEKLSDNVASNMNTLGIHGGGRRNDKLKHLKSLQLTFDSSKIDGIYAIDLINNHKKNDVLENAPKISVTNDSDKTGRHQAKDDEKGNDLSETTICSMTTVNDEKINYNSKLSDSKTGLESEVEMLREELREAAAVEISLYSVVAEHGSSANKVHAPARRLYRFYCHIFSSKSSSSLASAARTIVSGLMLVSKSCGHDVPRLTFWLSNAILLRGMIKNAVEKSQISKNSNAEENLDDWDEPQTLVTAVEKVEAWIFTRIVESVWWQSLTPYMQSAASKGSSSRKTSGKRYVIGDQDQGKFSIDLWKKAFTDAGERICPLRAGGHDCGCLHIITRLLIEQLVSRLDVAMFNAILRESADEMPTDPFSDPISDSKVLPIPAGKSSFGSGAQLKNAVGNWSRCLADLYGIDDSDSLGNRNELNDNHEAAPFKVFNLLNALSDLMMLPFEMLAERSTRREVCPNLGVPLIRRVLTNFVPDEFCPSPVPEALLDALDSEDCIEGDEKSVASFPCMASPTIYSPPSASSLREVGSVSSGSPMLRKSYTSDNELDELDSPLNALIIEKTRSSPTSTGSNLLPKEMGGRRVVRYELLREIWGDNH 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 316526 320576 - Bma000190.3 Bma01g00019 74536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00019 981 ProSiteProfiles C2 NT-type domain profile. 7 156 IPR019448 -
Bma01g00019 981 Coils Coil 493 520 - -
Bma01g00019 981 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 51 157 IPR019448 -
Bma01g00019 981 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 1 980 IPR021827 GO:0005643
Bma01g00019 981 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 1 980 - -
Bma01g00019 981 MobiDBLite consensus disorder prediction 154 183 - -
Bma01g00019 981 MobiDBLite consensus disorder prediction 456 474 - -
Bma01g00019 981 MobiDBLite consensus disorder prediction 447 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00019 - - - vvi:100254476 865.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00019 Bma-Chr1:316526 Bma01g00940 Bma-Chr1:9147637 0 dispersed
Bma01g00019 Bma-Chr1:316526 Bma10g00194 Bma-Chr10:1721324 2.82E-154 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1175 Blo01g00367 . Bda01g02185 . Bpe13g00526 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0738 . . . . . . . . . . . Bma01g00019 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016656 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00019 Bma_Chr01 FPKM 3.084445 3.047966 0.605118 3.733071 7.568636 11.055445 4.874712 2.12564 0.594218 2.477867