Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00021 ATTGAAACAGTGGATCAGAATCCAGTCGTCGTTATAATTGGAGAGACAGGTTCCGGGAAGAGCACTCAACTCTCACAGATACTTCACAGAAGAGGATATACAAAGTCAGGAACTGTCGGGGTCACTCAGCCTCGTCGAGTGGCCGCTGTCTCTGTTGCCAGACGAGTTGCAAAGGAGCTAGGTGTTCCCCTTGGCGACGAAGTAGGATATGCTATACGATTTGAAGACAGAACTTCAGAAAGAACAAGGATCAAATACCTCACTGATGGTGTGCTCCTTCGAGAAAGTCTTGCTGACCCAGAGCTCAATCAATATTCAGTGATCATTTTAGACGAGGCTCATGAGAGGAGCCTGAACACAGATATATTGCTTGGACTTATGAAACGACTGGTTAGACGCCGTACATCCAATTTAAAGGTTCTAATCACTTCAGCAACCCTTGATGGAGATAAAGTATCAAAATTCTTTTCAGATTGCCCTGTTCTGACAATTCCAGGGAAGTTATTTCCCGTTGAGATTTTTTACAGCAGTGAGCTTCCTAAAAGCTATATTGAGTCATCTTTAAAGACAGCTCTTGATATACACGTACGAGAACCAGAGGGGGACGTTCTAATTTTCATGACGGGACAGGTTCGTGTATTTAGTCCTCCGCCACCAAATTGTCGCCGGTTTATTGTTGCCACAAACATAGCTGAAACTTCTTTGACTGTTGATGGTGTTGTGTATGTTATTGATGCCGGTTATGTCAAGCAGCGGCAATATAATCCTTCGACGGGCATGAACTCCCTTGATGTTGTGCAAATTAGCAAAGTGCAAGCAGCGCAGCGTGCGGGACGAGCAGGAAGAACACGTAGCGGGAAATGCTACCGTTTGTACCCAATGATTGTTTATGACGATAAATTCCTGGATGTAACAGTTCCTGAAATACAAAGAACATCTCTTGCTGGCAGTGTTCTTCATTTGAAATCATTGGACCTTTCCGATATTGATATTCTACAATTTGACTTTCTTGATCAACCTACCTCTGGTTCTTTAGAAGACGCATTGAAACAACTATATCTCATTGATGCTATTGATGAAAATGGATCAATCACAAGAATTGGACGAATTATGGCTGAGCTTCCTCTAGAACCGTCACTCTCGAGAACCCTTATAGAGGCAAATGAGTATGGTTGTATATCACAGGCTTTGTCTGTTGCTGCTATGCTATCAGCTGAAACCACATTGCTTCCTGGTCGCAGCAAGAGTACTGAAAAGAAAGGAAAGCACACTTCCTCGGACCTCCCGGATGGTTTTGGATGGGGTGATCACATCCAGTTGCTGCAGATCTATGAACACTGGGATCGTAGAAACTATGACATTGACTGGTGTAAAGACAATGGCTTGCAGGTGCGAGGAATGATGTTTGTCAAAGATGTCCGGAAACAGCTGTCTCAGATAATGCAGAAGATAGCAAAGGATGCCAACAGACGAGTAAAAGATAGGCAGGAGGATTATCAGAGTTTGAGGAAGGCTTTGTGTGTAGGCTATGCTAATCAACTTGCTGAGAGAATGATGTACCACAATGGCTATCGAACTCTAAATTTTAAACCCCAAGTAGTTCAGGTGCATCCATCTTCTGTTCTCAAACCAGACGAAGAAGGAAAGCTCGCTGACTATGTAGTCTACCATGAGCTAATAACGACATCACGCCCATACATGCGCAATGTATGTGCTGTGGACATGAGATGGGTCATGCCCATTTTGAACAAGGTTAAAAATCTGAATGTTAGGAAACTGAGTCGCGGCTCTGGTCCATCAAAGGAGACAATAGAAGGAAAAGATGAGGATTTTCCAAAGAAAGAGGTTGATGCCATCAAAGCGCCTGATGATCGGGAGAGTAGAGTTCAGGCCGCAAGAGAACGATATTTAGCTCGGAAAGAGAAGAAG 1929 43.7 IETVDQNPVVVIIGETGSGKSTQLSQILHRRGYTKSGTVGVTQPRRVAAVSVARRVAKELGVPLGDEVGYAIRFEDRTSERTRIKYLTDGVLLRESLADPELNQYSVIILDEAHERSLNTDILLGLMKRLVRRRTSNLKVLITSATLDGDKVSKFFSDCPVLTIPGKLFPVEIFYSSELPKSYIESSLKTALDIHVREPEGDVLIFMTGQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDAGYVKQRQYNPSTGMNSLDVVQISKVQAAQRAGRAGRTRSGKCYRLYPMIVYDDKFLDVTVPEIQRTSLAGSVLHLKSLDLSDIDILQFDFLDQPTSGSLEDALKQLYLIDAIDENGSITRIGRIMAELPLEPSLSRTLIEANEYGCISQALSVAAMLSAETTLLPGRSKSTEKKGKHTSSDLPDGFGWGDHIQLLQIYEHWDRRNYDIDWCKDNGLQVRGMMFVKDVRKQLSQIMQKIAKDANRRVKDRQEDYQSLRKALCVGYANQLAERMMYHNGYRTLNFKPQVVQVHPSSVLKPDEEGKLADYVVYHELITTSRPYMRNVCAVDMRWVMPILNKVKNLNVRKLSRGSGPSKETIEGKDEDFPKKEVDAIKAPDDRESRVQAARERYLARKEKK 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 325305 343660 + Bma030161 Bma01g00021 74538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00021 643 MobiDBLite consensus disorder prediction 601 643 - -
Bma01g00021 643 CDD SF2_C_RHA 169 292 - -
Bma01g00021 643 Pfam Helicase associated domain (HA2) 348 471 IPR007502 GO:0004386
Bma01g00021 643 PANTHER ATP-DEPENDENT RNA HELICASE 2 211 - -
Bma01g00021 643 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 151 325 IPR001650 -
Bma01g00021 643 CDD DEXHc_RHA-like 7 164 - -
Bma01g00021 643 Pfam Helicase conserved C-terminal domain 217 283 IPR001650 -
Bma01g00021 643 Gene3D - 212 304 IPR027417 -
Bma01g00021 643 Gene3D - 168 211 IPR027417 -
Bma01g00021 643 Coils Coil 485 505 - -
Bma01g00021 643 Pfam AAA domain 8 132 IPR003593 -
Bma01g00021 643 Gene3D - 331 488 - -
Bma01g00021 643 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 165 IPR014001 -
Bma01g00021 643 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 106 115 IPR002464 -
Bma01g00021 643 PANTHER ATP-DEPENDENT RNA HELICASE 210 581 - -
Bma01g00021 643 SMART AAA_5 6 247 IPR003593 -
Bma01g00021 643 MobiDBLite consensus disorder prediction 593 643 - -
Bma01g00021 643 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 502 583 IPR011709 -
Bma01g00021 643 PANTHER - 210 581 - -
Bma01g00021 643 PANTHER - 2 211 - -
Bma01g00021 643 SMART ha2_5 347 441 IPR007502 GO:0004386
Bma01g00021 643 SMART ultradead3 1 174 IPR014001 -
Bma01g00021 643 Gene3D - 1 167 IPR027417 -
Bma01g00021 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 485 IPR027417 -
Bma01g00021 643 SMART helicmild6 182 284 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00021 K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] - qsu:112022268 1018.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00021 Bma-Chr1:325305 Bma13g00371 Bma-Chr13:6870713 0 dispersed
Bma01g00016 Bma-Chr1:297134 Bma01g00021 Bma-Chr1:325305 1.36E-159 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1173 Blo01g00369 . Bda01g02187 . Bpe13g00524 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007202 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 5 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00021 Bma_Chr01 FPKM 6.581404 9.766204 8.236959 9.28373 9.859196 8.187785 9.878215 4.854535 5.039883 5.872876