Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00022 ATGGCAGCTGGAAGACATGGGGGTTATCGTGATAATGAGTTCAAGGACCGTGAATCCAACTTCGAAGTGCCAAGGAGAAGTTTAGGTACTACCAAGCAAGAATTTGAACGGAATAGAAATCGTAATCAGGATAGTGAAAGCAGTAGAGTTCAGGATTTAAGAGGTGGGAGTAGGGTTAGGCAAAGGGATATCAAAGAGAGAGAAGCGGTCAATGGTGATACTCATTCCTCTTCAAGGAGTAATTCCGGCAATAGTAGTGGAGACCCTGGACCCAAGAGAATTCAGTTTCCTGTTAGGACGACAGATAGGGAACCAGGTGAATTATCTAGTGAGAGTGGTTCAGATGATGCCACTGAATCAAACTTGCAGATTAAAGACAGAGAAGGTGTGAATGTATCTGAGAATGGAAGATCTCCGGTAGTCACGAAGAGGAAGTTTTCTCCCATAGTATGGGACATAGACGATGATGCAAGAAGTAACTCATCAAAACGGAGGATTAATCCGACAACAACAGCTCTCCCCCCTCCACCACCACTACCTAAGGTGTATCGTGAGTCTCCCAGTGTTATTCCAGATGGAGGTGTTCTCATATCTCCTATCCAAGAATTGCAGTCTTCTTTCCCAGTTCAATCTCGTGAGTCGGATGGGGCTTTGATGTCCCAGTCTCCTGTGAGATTGTCTTCTATCTCATCGGGGAAGGTATTGGATAGTAACGTTGAAGCTGGGCATTTAGAAGATGACGACTATGTTCCAACAAGAAATATATCTTCTTCAAGATGGGCAGCCGGTAATAACTCTCCAGGTGATGAAGGTGAATTTTTTGAAGATGACTTGATGCTAAAAAGGCAGCGGAAAATTTCACAGTCCGAGTCTTTGGATACCAGAGTGCGCAGAAAATCCTTAAGTCCTGAAGATGGGGAGGTTAAGAAACAAGGCTCTGAAGCAAACGGGGTGAGGTCATCTGATTCTGACGACTTACTACATAGTGCAAGGTCTATTAGTAGAGATGATGATCCGGGTAATGAATCTGGGAGGGAAGATAGCATGGACGTTGACGAGGACGATCGTAAAAATCTTGCTAACGCTAGTCGTTCAAATACAGATTCTGACTATGAGGATGATCCTTGTCTGACACCTGAACGGTCAGTTCCTCAGAGAAATGTAAACATGCTTCAAGGTTGCAGAAGTGTTGATGAGTTTGAGAGATTAAACAAAATTGATGAAGGAACATATGGTGTTGTATATAGAGCCAGAGACAAGAAAACTGGTGAAATTGTGGCATTGAAGAAAGTGAAAATGGAGAAGGAAAGAGAAGGTTTTCCACTGACATCTTTGAGGGAAATAAACATTCTTCTTTCATTTCATCACCAGTCAATTGTAGATGTCAAGGAAGTTGTAGTGGGAAGTAGTCTTGATAGTATTTTTATGGTAATGGAGTACATGGAACATGATCTTAAGGGACTTATGGAATCAATGAAGCAGCCGTTTAGTCAGAGTGAAGTCAAATGCCTAATGATTCAGCTACTAGAGGGAATTAAATATCTCCATGATAACTGGGTGCTCCATCGGGATTTAAAGACATCTAATTTGCTTTTGAACAATCGAGGCGAGTTGAAGATTTGTGACTTTGGGTTGGCTCGGCAATATGGTAGTCCTTTAAAACCATATACTCATTTAGTTGTTACACTTTGGTACCGGGCACCTGAACTTCTGTTGGGAGCCAAACAATATTCAACTGCAATTGATATGTGGTCATTAGGTTGTATTATGGCTGAATTGTTATCAAAAGAACCTCTATTCAATGGTAAAACTGAAGTTGATCAACTAGACAAGATTTTTAGAACTCTAGGAACACCAAACGAGACAATTTGGCCTGGATTTTCTAAGCTTCCTGGAGTTAGGGTTAATTTTGTCAAGCACCAGTACAACTTACTTCGCAAGAAATTCCCAGCTACATCATTTACTGGATCTCCAGTTCTATCTGATTCTGGATTTGATTTATTGAACAGACTCTTAACTTATGATCCTGAAAAGCGAATAACAGTTGGAGATGCTCTTAATCATGAGTGGTTTCACGAAGTTCCTCTTCCAAAATCAAAAGAGTTCATGCCGACTTTTCCTGCTCAACATGCACAAGACAGGCGGATGCGAAGAATAATGAAGAGCCCAGATCCCTTGGAAGAGCAGCGGAGAAAAGAATTGGAACTGAAGGAACTTGGAGCTACTGGTCTATTTGGTTGA 2241 41.63 MAAGRHGGYRDNEFKDRESNFEVPRRSLGTTKQEFERNRNRNQDSESSRVQDLRGGSRVRQRDIKEREAVNGDTHSSSRSNSGNSSGDPGPKRIQFPVRTTDREPGELSSESGSDDATESNLQIKDREGVNVSENGRSPVVTKRKFSPIVWDIDDDARSNSSKRRINPTTTALPPPPPLPKVYRESPSVIPDGGVLISPIQELQSSFPVQSRESDGALMSQSPVRLSSISSGKVLDSNVEAGHLEDDDYVPTRNISSSRWAAGNNSPGDEGEFFEDDLMLKRQRKISQSESLDTRVRRKSLSPEDGEVKKQGSEANGVRSSDSDDLLHSARSISRDDDPGNESGREDSMDVDEDDRKNLANASRSNTDSDYEDDPCLTPERSVPQRNVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTSLREINILLSFHHQSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMESMKQPFSQSEVKCLMIQLLEGIKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEVDQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNRLLTYDPEKRITVGDALNHEWFHEVPLPKSKEFMPTFPAQHAQDRRMRRIMKSPDPLEEQRRKELELKELGATGLFG 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 345531 348334 - Bma000192.3 Bma01g00022 74539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00022 746 MobiDBLite consensus disorder prediction 274 312 - -
Bma01g00022 746 SUPERFAMILY Protein kinase-like (PK-like) 392 697 IPR011009 -
Bma01g00022 746 CDD STKc_CDC2L1 394 691 IPR045267 GO:0004674|GO:0005524|GO:0006468
Bma01g00022 746 MobiDBLite consensus disorder prediction 170 184 - -
Bma01g00022 746 MobiDBLite consensus disorder prediction 206 235 - -
Bma01g00022 746 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 222 746 - -
Bma01g00022 746 PANTHER CELL DIVISION PROTEIN KINASE 222 746 - -
Bma01g00022 746 MobiDBLite consensus disorder prediction 148 162 - -
Bma01g00022 746 Pfam Protein kinase domain 400 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00022 746 MobiDBLite consensus disorder prediction 74 89 - -
Bma01g00022 746 SMART serkin_6 400 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00022 746 MobiDBLite consensus disorder prediction 324 379 - -
Bma01g00022 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Bma01g00022 746 Gene3D Phosphorylase Kinase; domain 1 384 482 - -
Bma01g00022 746 MobiDBLite consensus disorder prediction 8 73 - -
Bma01g00022 746 MobiDBLite consensus disorder prediction 206 384 - -
Bma01g00022 746 Gene3D Transferase(Phosphotransferase) domain 1 483 724 - -
Bma01g00022 746 MobiDBLite consensus disorder prediction 1 187 - -
Bma01g00022 746 MobiDBLite consensus disorder prediction 111 128 - -
Bma01g00022 746 ProSiteProfiles Protein kinase domain profile. 400 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00022 K08818 CDC2L; cell division cycle 2-like [EC:2.7.11.22] - zju:107428364 1054.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00022 Bma-Chr1:345531 Bma11g00324 Bma-Chr11:3049421 1.63E-92 dispersed
Bma15g00761 Bma-Chr15:15730603 Bma01g00022 Bma-Chr1:345531 3.68E-66 dispersed
Bma01g00022 Bma-Chr1:345531 Bma03g00379 Bma-Chr3:2882032 4.39E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66237 PF00069 Pkinase 1.80E-73 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00022 Bma_Chr01 FPKM 11.273889 11.060422 7.743168 7.415775 24.190935 24.967813 24.791126 6.4953 6.00547 7.319569