Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00026 ATGGTGTTTATCCAGGTATTTGAATTCTTGGAGAATATTTCTACCAGTTTGACAGATTTGGCTTCCGGAGAACTTGCTACTCTAAAGGAGTTAAAGAAGAACGAGGAAGGAGATTTTCCGTTTGGGATAGAAGATCTTTTATACTATGTCAAGAAGGTAGAAGAGCAACATCTTAATATAGATTTTGTGGCTCTTAAGCAATACTTTCCTATCAGATTGGTTCTATCTGGTGTCTTTAAAATAGTCCAAGATCTTTTTGGTTTAAGGTTAGAGGAAGTGACTAATGCTGAAGTTTGGCATAGTGATGTAACATTGTTTTCAGTTTTCGACTTAAATTCTGGTGAATTAATGGGTTATTTCTACCTTGATATGTACACAAGGTTAGATTTTTAA 393 34.35 MVFIQVFEFLENISTSLTDLASGELATLKELKKNEEGDFPFGIEDLLYYVKKVEEQHLNIDFVALKQYFPIRLVLSGVFKIVQDLFGLRLEEVTNAEVWHSDVTLFSVFDLNSGELMGYFYLDMYTRLDF 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 382189 382765 + Bma000197.1 Bma01g00026 74543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00026 130 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 5 128 - -
Bma01g00026 130 Pfam Peptidase family M3 5 127 IPR001567 GO:0004222|GO:0006508
Bma01g00026 130 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 5 127 IPR045090 GO:0004222|GO:0006508
Bma01g00026 130 Gene3D - 3 129 - -
Bma01g00026 130 PANTHER SACCHAROLYSIN 5 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00026 K01392 THOP1; thimet oligopeptidase [EC:3.4.24.15] - csv:101203244 195.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00026 Bma-Chr1:382189 Bma14g02112 Bma-Chr14:44634530 8.27E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1134 Blo01g00374 . Bda01g02194 . Bpe13g00518 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0720 . . . . . . . . . . . Bma01g00026 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011877 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30