Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00027 ATGATCAATAGATTATTTAATAAACTCCCCCGAAAATCATCCAAGAGTTCTGAAAGTCGTGAACATGGTGGAAGTGGAAGCCATCAATCATATTCGAATTCCTATACTTCTACTAGTTCAAGAAGTAGTGATTTGGGAGCTACCAAGTCTGGAAAGATTACTACTTTTCCAGCGAACTACTCTATACTAGATGTGGGGCAAAATCATAATGGTAGCAAAGCCATGCGGGGGGCACCTGCAAAGCTCAATGGAAATCTTATATCTTCCTATGAAGCATTGCCTGGCTTCAAAGATGTTGCTAGTTCTGAGAAGCAAAATTTGTTCCTAAAAAAATTGAGCTTGTGTTGTGTTGTATTTGACTTTACTGATCCGACAAAACACCTAAAAGAGAAGGAGATCAAGCGGCAGACATTGTTGGAGCTTGTGGATTATGCAACTTCCGTGACTAGTAAATTTTCAGAAATTGTTATCCAAGAAGTTATCAAAATGGTATCTGCGAATATATTTCGGACTACCAGTCCTCAACCACGGGAGAACAAATTTGTCGAAGGCTTTGATTTGGAAGAGGAGGAGCCTATGATGGATGCTGTGTGGCCGCATTTGCAAATTGTATATGAGTTCTTTTTAAGATTTGTGTCATCATCAGAGATGGATGCGAAATTAGCCAAAAGATACATTGATCACTCCTTCATTCTGAAGCTGCTAGATCTTTTTGACTCTGAAGATCCTAGAGAAAGGGAATATTTGAAAACCATTGTGCACCGCATCTACGGCAAGTTCATGGTACATCGTCCATTTATCAGGAAAGCCATAAACAACATATTTTATCGTTTTATTTTGGAGACAGAAAAGCATAATGGGATTGCTGAACTATTGGAAATCTTGGGAAGTATTATCAATGGGTTTGCTCTCCCTCTTAAAGAAGAACACAAATTGTTCCTTGTTCGGGTATTGATTCCTTTGCACAAACCAAAATGCTTATCGATGTATCACTTGCAGCTATCCTATTGCATCACACAGTTTGTGGAGAAAGATTGTAAACTTGCTGATACAGTTATAAGGAGTTTATTGAAGTACTGGCCCATCACAAATAGTTCTAAAGAGGTCATGTTCCTTGGTGAATTGGAGGAAGTACTAGAAGCGACTCAGCCACCAGAGTTCCAACATTGCATGGTGCCCCTGTTTCGTCAGGTTGCTCGCTGTTTAAATAGTTATCACTTTCAGGTTGCAGAAAGGGCTTTATTTTTTTGGAACAATGATCACATCAAGAACTTGATTAAACAAAATCAGAAGGTCATACTTCCAATTATCTTCCCGGCATTGGAGAAAAATGCAATGAATCATTGGAATCAGGCTGTTCATAGCTTGACTTTAAACGTCCGTAAGATATTCTACGATCTCAATCCTGAACTATTCAACGAATGCTTACTCAAATTTCAAGAAGATGAATTGAAGGAAAATGCCAAGAAAGCAATACGGGAAGCCACGTGGACTCGTTTAGAACAACTTGCTGCAGAGAAATCCGTGAGCAATGAAGCTGTTCTAGTTTCCTATAAAGCCCCCTCTCAGACTTATTCAGGC 1581 39.22 MINRLFNKLPRKSSKSSESREHGGSGSHQSYSNSYTSTSSRSSDLGATKSGKITTFPANYSILDVGQNHNGSKAMRGAPAKLNGNLISSYEALPGFKDVASSEKQNLFLKKLSLCCVVFDFTDPTKHLKEKEIKRQTLLELVDYATSVTSKFSEIVIQEVIKMVSANIFRTTSPQPRENKFVEGFDLEEEEPMMDAVWPHLQIVYEFFLRFVSSSEMDAKLAKRYIDHSFILKLLDLFDSEDPREREYLKTIVHRIYGKFMVHRPFIRKAINNIFYRFILETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKCLSMYHLQLSYCITQFVEKDCKLADTVIRSLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQHCMVPLFRQVARCLNSYHFQVAERALFFWNNDHIKNLIKQNQKVILPIIFPALEKNAMNHWNQAVHSLTLNVRKIFYDLNPELFNECLLKFQEDELKENAKKAIREATWTRLEQLAAEKSVSNEAVLVSYKAPSQTYSG 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 386212 389231 + Bma030162 Bma01g00027 74544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00027 527 SUPERFAMILY ARM repeat 105 490 IPR016024 -
Bma01g00027 527 MobiDBLite consensus disorder prediction 23 47 - -
Bma01g00027 527 MobiDBLite consensus disorder prediction 1 47 - -
Bma01g00027 527 Gene3D - 100 503 IPR011989 -
Bma01g00027 527 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 522 IPR002554 GO:0000159|GO:0007165|GO:0019888
Bma01g00027 527 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A 59 KDA REGULATORY SUBUNIT B' ETA ISOFORM 1 522 - -
Bma01g00027 527 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 93 504 IPR002554 GO:0000159|GO:0007165|GO:0019888
Bma01g00027 527 PIRSF PP2A_B56 1 526 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00027 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' - csv:101203485 825.469
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00027 Bma15g00248 CCT
Bma01g00027 Bma06g00582 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00027 Bma-Chr1:386212 Bma02g00039 Bma-Chr2:383164 0 dispersed
Bma01g01945 Bma-Chr1:71836005 Bma01g00027 Bma-Chr1:386212 0 transposed
Bma13g00572 Bma-Chr13:12172333 Bma01g00027 Bma-Chr1:386212 0 transposed
Bma14g01357 Bma-Chr14:25221151 Bma01g00027 Bma-Chr1:386212 0 transposed
Bma15g00248 Bma-Chr15:2483549 Bma01g00027 Bma-Chr1:386212 0 transposed
Bma01g00027 Bma-Chr1:386212 Bma06g00582 Bma-Chr6:31176507 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1133 Blo01g00375 Blo16g01186 Bda01g02195 . Bpe13g00517 . . Bma15g00248 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag1103 Cone8ag0719 . . . . . Blo06g00818 . . . . . Bma01g00027 Bma06g00582 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000671 5 4 6 5 5 2 4 2 2 2 2 2 3 2 2 4 2 8 3 2 2 4 2 2 2 2 2 9 5 3 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00027 Bma_Chr01 FPKM 25.731203 27.179489 20.604933 21.310181 25.077412 24.603609 25.874273 18.798361 16.802139 19.836718