Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00031 ATGAGCATGCAGGAGGCTCTCTCCGCGTCTGGGCTGAGCTCCGAGAAGCTCAGCCTACCTACTCTCCAGTCCAAGATGAAGTGTGACCCCGAAGGATATGAATCAGAACTTGTTCTTCTTTACAGCCAATTCAAATCCTCTGTGGAGCTCTGCCAACAACAAGCTGCTCAGAACTTCACATCCTTCGGTGGCGTTAGTAGCGATCCTACTGTTGCCAAAAGCCTTGGGGAAAAGGCTATGTTCTTAGCCCATGTAACTCCTTTCTATACTCACCATCTCTCCGAGTTCCCCAAGCAACTCGCTGAATTGCTCCGCTCTTCCGCAAGATCACTGCCTTCAGCTCTGCGCTGTCACTTGGCGCAGTCTCTTATTCTTCTGATTAACAGACAGATGGTAGACATTGGAGAAAATTTGGCACTGTTCATGGAGCTGCAGACATTGGGTGATCGAGTATTAAGGAAGTTGGCATTCTCTCACATTATTCATAGCATTAAAAGAATGAATCAAAAGCACAAGAATGAAGCAAAAAATCGAATGCTTCAAAACATATTGTTTGTCATGCTACAGAAAGAGGACGAAGCATTAGCCAAGCGATCCCTTGTAACATTATGTGAGCTACATCGGAGGAAGCTGTGGTTTGATGATCGAACTGCAAATGCAATTTGTACTTCTTGTTTTCATCCATCGACTAGGATCATGATTGGTACTCTATCATTTCTTCTTGATTATGAGAAAATCGTAGATGCTGATGATGATGATAGTGATGCATCGAGTAGTGAAGATGACTCAACTCCTCTAGTACCTCATGCAGTGCTTAGTAGAGAATCTGTTTATAAGGCGCACCACAAAGGTACAGTTTCTAGCAAAAGGAAAAAGAAAGCGAAATTGCAACGGGTCATTCGTAGCATGAAAAAAAAGCAACGTTTGTCATCAGAGAGAAACACATCAGATCATTATTCACCACTTAACCATCTGAAGGATGCACAGGGATTTGTGGAGAAACTATTCTCTCGACTTCAGACCTGCAATGAACGGTTTGAGGTTAAGATGATGATGCTGAAAGTAATCGCTAGAACAGTTGGGCTTCACCACTTAATTTTGTTAAACTTTTATCCTTTTCTCCTGAAGTATTGCCAGCCTCATCAACGTGATGTCACAAGCTTACTTGCTGCAGCCGTTCAAACTTGCCATGATATGGTTCCTCCCGATGCAGTAGAGCCTCTTTTCAAACAAATTGTAAATCAATTTGTGCACGATCATTCTCGTCCAGAGGCCATTGCTGTTGGGCTTAATGTAATAAGGGAGATTTGTTTGCGTATGCCTCTGCTCATGACAGAAGATTTACTTCAAGATCTTGCTTTGTACAAGAAATCACATGAGAAGGCAGTTTCAGTGGCCGCACGATCTCTTATTGGTCTCTTCAGAGAGGTTTGTCCATCACTTTTGGTGAAGAAAGACCGAGGACGGCCTACTAACCCAACGGCAAGGCCGAAAGCATTTGGTGAAGTCAGTATAGTCAGCAATGTTCCTGGTGTTGAATTATTGCAAGATGACATTGACAGGACAGATGAAGATGATTCTGGATCTGGTAACGAGGAAAATGCCAGCTTAGATGAATGCACCCTAGATGACAATTATCAAAGTGAAGATGATAAATCAGAGGAACACAGTGCTATTGCTGAAGACAGAGATGGAAATTATAGTACTGACGGCACTGATGACAATGAATATGATGGTGGGTTTGATGATGATCATGATGAAGAAGAAGATGAAGAAAATGTGAGTGAGGATGAAGCATTCAACGAAGAGAGCTATAATGATGACGGTGAAGAGGATTCTGAAACTGAGGGCTCTGAAATGGCAAATGAGAATGGTTACAGGGAGAGCATAACTGAAATAAAAGATTCTAAAGTGAGGAAGAGGAAGTTCCCGGATTTTAAGGAAACAAATTATTGCTGCGGATTCGAGTCTTCAGGCTCTAAAAGGGTTGGCTAG 1995 42.56 MSMQEALSASGLSSEKLSLPTLQSKMKCDPEGYESELVLLYSQFKSSVELCQQQAAQNFTSFGGVSSDPTVAKSLGEKAMFLAHVTPFYTHHLSEFPKQLAELLRSSARSLPSALRCHLAQSLILLINRQMVDIGENLALFMELQTLGDRVLRKLAFSHIIHSIKRMNQKHKNEAKNRMLQNILFVMLQKEDEALAKRSLVTLCELHRRKLWFDDRTANAICTSCFHPSTRIMIGTLSFLLDYEKIVDADDDDSDASSSEDDSTPLVPHAVLSRESVYKAHHKGTVSSKRKKKAKLQRVIRSMKKKQRLSSERNTSDHYSPLNHLKDAQGFVEKLFSRLQTCNERFEVKMMMLKVIARTVGLHHLILLNFYPFLLKYCQPHQRDVTSLLAAAVQTCHDMVPPDAVEPLFKQIVNQFVHDHSRPEAIAVGLNVIREICLRMPLLMTEDLLQDLALYKKSHEKAVSVAARSLIGLFREVCPSLLVKKDRGRPTNPTARPKAFGEVSIVSNVPGVELLQDDIDRTDEDDSGSGNEENASLDECTLDDNYQSEDDKSEEHSAIAEDRDGNYSTDGTDDNEYDGGFDDDHDEEEDEENVSEDEAFNEESYNDDGEEDSETEGSEMANENGYRESITEIKDSKVRKRKFPDFKETNYCCGFESSGSKRVG 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 400214 404533 - Bma000200.1 Bma01g00031 74548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00031 664 MobiDBLite consensus disorder prediction 518 545 - -
Bma01g00031 664 MobiDBLite consensus disorder prediction 514 631 - -
Bma01g00031 664 MobiDBLite consensus disorder prediction 575 618 - -
Bma01g00031 664 Pfam SDA1 444 623 IPR007949 -
Bma01g00031 664 Pfam NUC130/3NT domain 81 132 IPR012977 -
Bma01g00031 664 PANTHER PROTEIN SDA1 HOMOLOG 14 613 - -
Bma01g00031 664 MobiDBLite consensus disorder prediction 546 570 - -
Bma01g00031 664 SUPERFAMILY ARM repeat 38 482 IPR016024 -
Bma01g00031 664 Coils Coil 286 306 - -
Bma01g00031 664 PANTHER HSDA/SDA1-RELATED 14 613 IPR027312 GO:0000055|GO:0042273
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00031 K14856 SDA1, SDAD1; protein SDA1 - zju:107428499 851.277
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g596 Blo01g00379 . Bda01g02201 . Bpe13g00513 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0708 Cone12ag0686 . . . . . . . . . . Bma01g00031 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007839 1 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00031 Bma_Chr01 FPKM 26.57902 30.342075 48.237881 44.960701 45.493958 51.385349 54.065445 47.491413 46.677753 46.292347