Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00042 ATGAAGAGGGGATCCATCTTCTTCCTTTTCATCTGCTCTGTATTATTAATGGAGCTGACAGAAGGTGATCCAAGAGCGCAGACAGTTCAGCTTATTTGCGGACATCAACCTGAGCACAACAGTACATTATACGTCCCGAATTTCGTCGCAACAATGGAAAAAATCAGCGAACAAATGCGAACATCCGGCTACGGAGTCGCCGTCACTGGTTCCGGGCCCGACACAAACTACGGCCTCGCTCAATGCTACGGCGATCTCTCTTTACTCGACTGCGTTTGGTGCTACGCCGAGGCTCGGACCGTCCTCCCTAAGTGCTTCCCCTACAACGGCGGTCGAATTTACCTCGGCGGCTGCTTCATGAGGGCCGAGAATTACAGCTTCATCCACGAATTTTCCGGACCGGAGGACCGATCCGTTTGCGGGAACGAGACTCGGACGAGTTCCTTGTTTCGAGACTCAGCGAGGGCGGCTGTTATGCGGGCAGTTGGGGCAGCGCCGAACAACACGATGTTGTTCGCGAGAGATGAGCTGGCGCTGCCTGGGACGGTTAACGAATCGGTCTACGTGCTCGCTAATTGCTGGAGAAGTTTGAATTCAAGCTCTTGCAAAGCGTGTTTGCAGAACGCCTCGTCGTCGGTATTGGGCTGTTTGCCGGCGTCGGAAGGTCAAGCGTTTTTTACCGGCTGCGTCATCAGATACTCCGATCGTAATTTCCTCAACAGTGAAGCTTCTAGTAGCAGATCGATAGGTATAACAACCGCCATTATTGTGTCTGTTGTAAGCTCTGCGGTCGTGATTACAGTTGGAGTAATAATTGGAGCTTATGTGTGGAAGCAGAGATACATCCAAAAGAAAAGAAGAGGTTCCGATAATGCCGAAAAGTTGGTTAAAACCCTCCATGACAGTAGCTTGAACTTCAAATACTCGACCCTGGAGAAGGCTACAGGATCTTTTAGCAACGATAACAAGCTCGGACAAGGAGGATTCGGCACTGTTTATAAGGGGGTTCTGCCTGATGGACGAGAGATTGCAGTAAAGAGGCTGTTCTTCAACAACAAACACAGGGCGGGAGATTTTTACAACGAAGTGAACATAATTAGCAGTGCAGAACACAAGAATCTAGTTAGATTATTAGGCTGCAGCTGTTCCGGCCCTGAAAGTCTTCTCGTCTATGAATTCTTGCCCAACAAGAGCCTCGATCTCTTCATTTTTGTTCCTAATTCTGGGAAATCGTTGAATTGGGAGAAGCGATACGACGTTGTAATCGGAACAGCCGAAGGTCTAGTTTACTTACACGAGGACTGCAAGATCAAGATCATTCACAGAGACATCAAGGCTAGTAATATTCTTCTGGACATCAAATTTCGGCCAAAAATTGCTGATTTCGGCTTAGCCAGGTCCTTCCAAGAAGACAAGAGCCATATCAGTACAGCAATAGCTGGAACCTTAGGATATATGGCTCCGGAATACTTAGCTCTCGGCCAGTTGACGGAGAAGGCCGACGTGTACAGCTATGGTGTGCTCATACTAGAGATCATTACAGGGAGACAGAATAATAGGAGTAAAACTACTGAATACTCCGACAGCTTGGCCACAGTTGCATGGAGGCACTTTCAAGCAGGGAGAGTGGAGGAGCTAATAGACCCTAACATAAAGAGCCAAGATCAGTACAATGCCAACGCTAAGAATGAGATAATGAGAGTGGTGCATATAGGACTTTTATGCACCCAAGAGGTTCCGTCCTTAAGACCCGCGATGTCGAAAGTATTGCAAATGCTAACTAAGAAGGAAGAGGATCTTCCTCCGCCCACGAATCCGCCTTTCATGGACGAGCAATCTATGCAATTCAACGACTCATGCGAAGTTCCTTTGCATACGCTTAATGCCGATAATTCTGCTTCTATTGCTACCTACTCCCACAGCTCTTTCTATCCCAGATGA 1941 47.81 MKRGSIFFLFICSVLLMELTEGDPRAQTVQLICGHQPEHNSTLYVPNFVATMEKISEQMRTSGYGVAVTGSGPDTNYGLAQCYGDLSLLDCVWCYAEARTVLPKCFPYNGGRIYLGGCFMRAENYSFIHEFSGPEDRSVCGNETRTSSLFRDSARAAVMRAVGAAPNNTMLFARDELALPGTVNESVYVLANCWRSLNSSSCKACLQNASSSVLGCLPASEGQAFFTGCVIRYSDRNFLNSEASSSRSIGITTAIIVSVVSSAVVITVGVIIGAYVWKQRYIQKKRRGSDNAEKLVKTLHDSSLNFKYSTLEKATGSFSNDNKLGQGGFGTVYKGVLPDGREIAVKRLFFNNKHRAGDFYNEVNIISSAEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDLFIFVPNSGKSLNWEKRYDVVIGTAEGLVYLHEDCKIKIIHRDIKASNILLDIKFRPKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLALGQLTEKADVYSYGVLILEIITGRQNNRSKTTEYSDSLATVAWRHFQAGRVEELIDPNIKSQDQYNANAKNEIMRVVHIGLLCTQEVPSLRPAMSKVLQMLTKKEEDLPPPTNPPFMDEQSMQFNDSCEVPLHTLNADNSASIATYSHSSFYPR 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 473093 475573 + Bma000210.1 Bma01g00042 74559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00042 646 SMART serkin_6 318 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00042 646 Pfam Salt stress response/antifungal 145 235 IPR002902 -
Bma01g00042 646 Pfam Salt stress response/antifungal 41 125 IPR002902 -
Bma01g00042 646 ProSiteProfiles Gnk2-homologous domain profile. 26 127 IPR002902 -
Bma01g00042 646 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Bma01g00042 646 CDD STKc_IRAK 324 595 - -
Bma01g00042 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Bma01g00042 646 Pfam Protein kinase domain 319 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00042 646 ProSiteProfiles Gnk2-homologous domain profile. 132 238 IPR002902 -
Bma01g00042 646 Gene3D Phosphorylase Kinase; domain 1 278 393 - -
Bma01g00042 646 ProSiteProfiles Protein kinase domain profile. 318 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00042 646 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 6 625 - -
Bma01g00042 646 Gene3D - 137 238 IPR038408 -
Bma01g00042 646 Gene3D - 26 127 IPR038408 -
Bma01g00042 646 Gene3D Transferase(Phosphotransferase) domain 1 394 602 - -
Bma01g00042 646 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 6 625 - -
Bma01g00042 646 SUPERFAMILY Protein kinase-like (PK-like) 302 617 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00042 Bma-Chr1:473093 Bma01g00967 Bma-Chr1:9536752 2.50E-164 dispersed
Bma01g00042 Bma-Chr1:473093 Bma02g00365 Bma-Chr2:5827410 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66238 PF00069 Pkinase 2.20E-43 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00042 - - vvi:100251695 940.258