Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00047 ATGGCAAACGGAAGCGAGGATGGGGTTCATCATTTATCAGCCGTCCTCTCCTCTCCGGACAGAGATTTTCTCCTCAACAGCAATGGTGATCAGGTTATAATCAGTTCCTTGGTCGGGAAAAACGTCGGGCTGTATTTCTCTGCCTCGTGGTGTCCTCCGTGTCGCCGTTTCACCCCGACCTTAATGGATGTCTACGAAGATTTGGCGTCAAAAGGTGATTTCGAAGTGGTTTTAATCACCTCCGATCGCGACAATGAATCGTTCGATAATTACTTCTCCAAAATGCCATGGCTGGCGATTCCATTTTCCGATTCAGAGACCAGAAAGCGGCTCAAGGAGCTCTATGATGTGAAGGGCATTCCTTGCCTCGTCGTTCTTGATTCTGATGGTAGGGTTTCGACCGGTGAAGGGGTGAGAATCGTTGAGGAATATGGAGCCGAAGCTTATCCGTTCACCCCTGAATCGATCAATTCCTTGATCCAATGGGATGAGTTTGCTAAAAACAATCAAACCTTGAGCTCGCTCTTGGTTTCCTCCTCGCGTAATTACGTGATTTCAAATGATGGGAGTCAGATTCTTGTATCTGAGCTCGAGGGGAAGATGATCGGACTGTTCTTTGCTATACATGGTCATAAAACATCCGTCGAGTTTTCTGCAAATCTAGCGAAGATCTACGATACCCTAAAAGGGAAAGGAGAAAATTTAGAGATTGTGTTCATACCTTTGCATTACGAAGAAGAACAGTTCGAAGAATTCTTGGCATCAATGCCATGGCTATCCTTGCCATGCAAGGACAAAAGCTCTAATAAACTTGCTCGTTTCTTCGACCTTCAACGCTTTCCTACATTGGTCATTCTAGGCCCAGATGGAAAGACTTTAAACCCTGACGTTTCTCGTCTCATCGAAGAATATGGTATTTATGCCTACCCATTTTCACCGGAGAAACTCGTTGAATTTGCTGAGATTGAGAAAGCTAAGAGAGAAGCTCAAACGCTAGAGTCTGTCTTAGTTTCTGGAGACAGAAACTTTGTGATCGGTAAAGACGGTTCTAAGATTCTTGTGTCTGAACTCGTCGGCAAGATCATTCTGATCTATTTCTCATCCCATTGGTGTCCTCCTTGTCGTGCATTCCTGCCTAAGCTCATCGATTCGTATCATCAGATAAAAGAAAAAGACGATTCCTTCGAAGTCATTTTCGTTTCGAGCGATCCCGATCAACCCTCTTTTGACGAGTTCTTTGCGACCATGCCTTGGTTAGCCTTACCCTTTGGCGATGAACGGAAATCATTTCTCAGTAGATATTTCAAAATCAACGCCATTCCCGCAGCTGTGGTGATCGGTCCGAGCGGGAAGACAATCTCTACGGAAGCTCGGAGGCTGATAGAAGCTCACGGATCGAATGCTTATCCATTCAGTGAAAATCATCTGAGGCAGGTGGAGGAGGAGCTGGAGGAGAAACCAAAGGGATGGCCGGAGAAGATCAAGCACGAACTTCATGAAGAACACGAACTGGTTCGAGTCCGGGTAGATGAATATGTGTGTAAGGCATGTGATGAAACGGGATCTTTATGGTCATTTTGGTGTAGTGAGTGTGATTTCGGTCTTCACCCGCACTGTGCATTGAAGAAAGTTGATGAAGAAGACGATGTCGAGAAGGCTGAGGGATGGATTTGCGACGGAGACGTATGCCGGAAAGGTTGA 1701 45.8 MANGSEDGVHHLSAVLSSPDRDFLLNSNGDQVIISSLVGKNVGLYFSASWCPPCRRFTPTLMDVYEDLASKGDFEVVLITSDRDNESFDNYFSKMPWLAIPFSDSETRKRLKELYDVKGIPCLVVLDSDGRVSTGEGVRIVEEYGAEAYPFTPESINSLIQWDEFAKNNQTLSSLLVSSSRNYVISNDGSQILVSELEGKMIGLFFAIHGHKTSVEFSANLAKIYDTLKGKGENLEIVFIPLHYEEEQFEEFLASMPWLSLPCKDKSSNKLARFFDLQRFPTLVILGPDGKTLNPDVSRLIEEYGIYAYPFSPEKLVEFAEIEKAKREAQTLESVLVSGDRNFVIGKDGSKILVSELVGKIILIYFSSHWCPPCRAFLPKLIDSYHQIKEKDDSFEVIFVSSDPDQPSFDEFFATMPWLALPFGDERKSFLSRYFKINAIPAAVVIGPSGKTISTEARRLIEAHGSNAYPFSENHLRQVEEELEEKPKGWPEKIKHELHEEHELVRVRVDEYVCKACDETGSLWSFWCSECDFGLHPHCALKKVDEEDDVEKAEGWICDGDVCRKG 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 525956 527977 - Bma000215.1 Bma01g00047 74564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00047 566 ProSitePatterns Thioredoxin family active site. 363 381 IPR017937 -
Bma01g00047 566 PANTHER THIOREDOXIN 6 541 - -
Bma01g00047 566 SUPERFAMILY Cysteine-rich domain 490 541 IPR046349 -
Bma01g00047 566 Pfam Thioredoxin-like 40 132 IPR012336 -
Bma01g00047 566 Pfam Thioredoxin-like 359 451 IPR012336 -
Bma01g00047 566 Pfam Thioredoxin-like 199 291 IPR012336 -
Bma01g00047 566 ProSiteProfiles Thioredoxin domain profile. 12 146 IPR013766 -
Bma01g00047 566 PANTHER NUCLEOREDOXIN 1-2-RELATED 6 541 - -
Bma01g00047 566 SUPERFAMILY Thioredoxin-like 24 133 IPR036249 -
Bma01g00047 566 Gene3D Glutaredoxin 16 152 - -
Bma01g00047 566 Gene3D Glutaredoxin 319 472 - -
Bma01g00047 566 Gene3D Glutaredoxin 175 312 - -
Bma01g00047 566 CDD TryX_like_TryX_NRX 22 151 IPR045870 GO:0004791
Bma01g00047 566 Pfam C1 domain 498 540 IPR004146 -
Bma01g00047 566 ProSiteProfiles Thioredoxin domain profile. 321 484 IPR013766 -
Bma01g00047 566 SUPERFAMILY Thioredoxin-like 184 293 IPR036249 -
Bma01g00047 566 SUPERFAMILY Thioredoxin-like 345 454 IPR036249 -
Bma01g00047 566 CDD TryX_like_TryX_NRX 342 471 IPR045870 GO:0004791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00047 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - mnt:21410370 737.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00047 Bma-Chr1:525956 Bma04g00259 Bma-Chr4:2174774 6.57E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g686 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00047 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001026 1 2 1 1 0 4 3 3 2 3 3 3 3 3 3 3 3 2 2 4 3 3 2 3 3 3 4 3 3 5 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00047 Bma_Chr01 FPKM 15.55911 16.459658 19.549458 17.551498 15.536969 16.423874 15.52349 24.10146 20.25025 20.204369