Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00050 ATGGCAGAATCCAAATCAGAATTGAGGAAACCGACATTCACTAAGGTTGACCAACTTCGCCCTGGCACCAGTGGCCACACTCTTACTGTTAAGGTCGTAAATACAAAGATGGTAATGCAGAAAGGGCGATCTGACGGTCCTCAAGTTCGTCAGATGCGAATTGCAGAATGCTTGGTAGGAGATGAGTCGGCTATGATTATTTTCACTGCAAGAAATGATCAAGTTGACTTGATGAAGGAGGGTGCGACCTTAACGCTGAGAAATGCAAAGATCGACATGTTTAAAGGATCAATGAGGCTTGCCGTAGATAAATGGGGCCGCGTAGAAGTAGCCGAACCGGCCAGTTTCACCGTGAAGGAAGATAATAATCTATCACTCATTGAATTCGAACTTATTAATGTTGTCGAAGAGTGA 414 44.2 MAESKSELRKPTFTKVDQLRPGTSGHTLTVKVVNTKMVMQKGRSDGPQVRQMRIAECLVGDESAMIIFTARNDQVDLMKEGATLTLRNAKIDMFKGSMRLAVDKWGRVEVAEPASFTVKEDNNLSLIEFELINVVEE 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 547629 548720 + Bma000218.1 Bma01g00050 74567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00050 137 PANTHER BNAA07G09820D PROTEIN 1 136 - -
Bma01g00050 137 SUPERFAMILY Nucleic acid-binding proteins 4 134 IPR012340 -
Bma01g00050 137 PANTHER OS05G0244600 PROTEIN 1 136 - -
Bma01g00050 137 CDD SoSSB_OBF 27 110 - -
Bma01g00050 137 Gene3D - 23 126 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00050 - - - tcc:18609460 249.595
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00050 Bma14g01791 CCT
Bma01g00050 Bma15g00186 CCT
Bma01g00050 Bma14g01791 ECH
Bma01g00050 Bma15g00186 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00689 Bma-Chr3:5740701 Bma01g00050 Bma-Chr1:547629 1.08E-62 transposed
Bma01g00050 Bma-Chr1:547629 Bma14g01791 Bma-Chr14:38500926 3.83E-81 wgd
Bma01g00050 Bma-Chr1:547629 Bma15g00186 Bma-Chr15:1932753 1.02E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g714 . . . Bda11g01264 . Bpe10g00838 Bma14g01791 Bma15g00186 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1037 Cone19ag1028 . Cone12ag0641 . . . . Blo06g00876 Blo11g00914 Bda07g01600 Bda11g01264 . . Bma01g00050 . . . . . Cma05g00010 . Car05g00008 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001754 3 2 1 3 1 1 3 2 1 2 1 2 3 2 2 3 2 7 3 2 2 2 2 2 2 1 2 2 2 4 67