Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00052 ATGGGTCGTGTTTGGATGAGGGGTCTGCTAGTTAGAACGAAGGCTTCCCTGCTTCTCCCGAAGCCTCCAATGGCTTCTTCATCCTTCGCTACTACTCCCGCATATCATCATCCCGTCTCTTTCCCTTCCTTACGGCTTCCTCTTCCTCGTCTCATTTCCTTTACTTTCTCAGATCGTCGTCGCCTCTCAGCTTCCCCGTGCCTTTCTAAGTCGTCTTCTCCTTTACTCTCTCGCGACCATTCGGACTTCGATTTCGGAGGAGATGAATGCACGAAAATTTCGAAGAAAAATGGGAAGTTTCTTCTGAAGGGAATGAGTTACTCTGAGCTGGAAAAATGGGTTCAATTGCATGGATACCGACCAGGTCAAGCGCTAATGTTGTGGAAACGCCTCTATGGTAAAGGCATTTGGGCGCATAATGGCGATGAGTTAGAAGGTTTGAACAAGGATTTTAAGAAAATGTTGACTGAAAAGGCTGAATTCAAGGCATTGTCTTTGCGAGAGATTCTAAATGCAGCTGATGGAACTAAAAAGATTTTATTCACTCTGGATGATGGGCTGGTTATAGAAACTGTCATCATACCATGTGAGAGAGGCAGGACCACTGTTTGTGTTTCAAGTCAAGTGGGTTGTGCCATGAACTGTCAATTTTGTTTCACCGGCAGGATGGGCTTGACGAGACATCTTACTGCTGCTGAGATTGTAGAGCAGGCTGTCTTTGCAAGGCGATTACTCACGAGTGAAGTTGGTTCCATTACCAACGTTGTTTTCATGGGGATGGGAGAACCACTTCATAACATTGACAATGTCATTAAAGCTGCGGACATAATGGTGCACGACCAAGGACTCCATTTCAGTCCTCGCAAAGTCACTGTTTCAACAAGTGGTCTCGTCCCCCAGCTGAAACGTTTCCTGCATGAAAGTAATTGTGCTTTAGCTGTTAGTTTGAACGCAACAACCGATGAGGTTAGAAACTGGATAATGCCAATAAATCGGAAGTATAAGTTAGGTTTACTGCTTCAGACCCTACGAGAAGAACTGCGCTTCAAACATAAGTACAAAGTTCTATTTGAATATGTGATGCTTGCCGGGATAAATGACAGCAAAGACGATGCAAAGAGGCTTGTCGAACTTGTTCGGGATATTCCTTGCAAGATTAATCTCATCTCCTTCAACCCTTATAGTGGAACTCAATTTAGACCCACAAGTGAGGAGAAAATGATTGAATTTCGGAATCTTTTGGCCGAAGGAGGGTGCAAGGTCTTCTTAAGACCGAGTAGAGGTGATGAACAGATGGCTGCTTGTGGTCAGCTCGGCAAGCCTGGTACTGTCCAAGCGCCATTACTCCGTGTGCCCGAGCAATTTCGAATGGCCATGCAAGCATCTGCTTGA 1392 45.33 MGRVWMRGLLVRTKASLLLPKPPMASSSFATTPAYHHPVSFPSLRLPLPRLISFTFSDRRRLSASPCLSKSSSPLLSRDHSDFDFGGDECTKISKKNGKFLLKGMSYSELEKWVQLHGYRPGQALMLWKRLYGKGIWAHNGDELEGLNKDFKKMLTEKAEFKALSLREILNAADGTKKILFTLDDGLVIETVIIPCERGRTTVCVSSQVGCAMNCQFCFTGRMGLTRHLTAAEIVEQAVFARRLLTSEVGSITNVVFMGMGEPLHNIDNVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLGLLLQTLREELRFKHKYKVLFEYVMLAGINDSKDDAKRLVELVRDIPCKINLISFNPYSGTQFRPTSEEKMIEFRNLLAEGGCKVFLRPSRGDEQMAACGQLGKPGTVQAPLLRVPEQFRMAMQASA 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 563149 566146 + Bma000220.2 Bma01g00052 74569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00052 463 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 99 439 IPR027492 GO:0030488|GO:0070475
Bma01g00052 463 ProSiteProfiles Radical SAM core domain profile. 197 424 IPR007197 GO:0003824|GO:0051536
Bma01g00052 463 SFLD adenosine C2 methyltransferase (RlmN-like) 98 440 IPR004383 GO:0006364|GO:0008173
Bma01g00052 463 Pfam Radical SAM superfamily 206 369 IPR007197 GO:0003824|GO:0051536
Bma01g00052 463 Gene3D Aldolase class I 164 444 IPR013785 -
Bma01g00052 463 Gene3D - 99 162 - -
Bma01g00052 463 PANTHER 23S RRNA METHYLTRANSFERASE 91 446 IPR040072 -
Bma01g00052 463 SFLD Radical SAM 98 440 IPR007197 GO:0003824|GO:0051536
Bma01g00052 463 SUPERFAMILY Radical SAM enzymes 200 416 - -
Bma01g00052 463 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 91 446 - -
Bma01g00052 463 Pfam 4Fe-4S single cluster domain 210 312 - -
Bma01g00052 463 CDD Radical_SAM 210 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00052 K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] - zju:107428723 665.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00052 Bma-Chr1:563149 Bma03g01519 Bma-Chr3:47895884 8.83E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g724 . . Bda01g02224 . Bpe13g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0658 . . . . . . . . . . . Bma01g00052 . . . . . Cma05g00005 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011256 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00052 Bma_Chr01 FPKM 123.579514 125.792175 130.607635 131.616364 119.203102 119.917595 120.864983 150.062683 151.181274 166.003311