Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00054 ATGGCGGCCAGGAGATTGTCCAAGCTTTTTTCTCGCTCCTTTGCTTCTCCTTCTTCCTTCATGAGCAGAGGACCAGGTACGAATCCTTACGTACGTAGAGCAATCGGAAAATACAGCACGGCGGCAGCCATTGAAGAACCTATCAATCCTTCTATCAACGTCAATTACACTCAGCTTTTGATCAATGGCCAATTCGTCGATTCAGCTTCCGGAAAAACTTTTCCGACGTTGGACCCGAGGACCGGCGAGGTAATTGCTCATGTTGCTGAGGGAGATGCGGAAGACATTGATCGAGCGGTTGCAGCCGCTCGCCGAGCATTTGACGAGGGACCATGGCCAAAGATGACTGCTTATTACTTCCAGGAACGATCTCGGATTATCCTGAGGTTCGCCGATTTAATGGAGAAGCACAACGATGAAATCGCGGCTCTTGAAACTTGGGATAACGGGAAGCCATATGAACAGTCTGCGAAATCTGAAATTCCTTTGCTAGTTCGTTTGTTCCGCTACTATGGAGGTTGGGCGGATAAGATCCACGGCCTTACAGTTCAGGCCGACGGTCCTCACCATGTTCAAACCTTGCATGAACCGATCGGAGTTGTGGGTCAGATTATTCCATGGAATTTTCCTCTTCTCATGTACGCATGGAAGGTTGGACCGGCACTGGCCTGTGGAAACACCATTGTTCTTAAAACAGCTGAGCAGACTCCATTGTCTGCCCTGTTCGTAACGAAGCTATTACACGAGGCCGGACTTCCTGATGGTGTGATTAATATTGTTTCTGGTTTTGGACCCACTGCCGGTGCTGCTCTTGCCAGTCATATGGATGTCGACAAGATTGCTTTCACTGGTTCGACCGAAACTGGGAAAATCATACTTGGATTGTCAGCAACAAGCAATCTTAAGCCGGTAACTTTGGAACTTGGCGGAAAATCCCCTTTCATCGTCTGCGAGGATGCTGACGTGGATGCGGCCGTTGAGCTCGCTCATTTTGCTCTATTCTTTAACCAAGGGCAATGCTGCTGTGCTGGTTCTCGTACTTTCGTACACGAAAGTGTGTATGATGAGTTCTTGGAGAAAGCAAAGGCGCGGGCTATGAAACGAACTGTTGGTGATCCGTTCAAGGAGGGTATTGAGCAAGGGCCTCAAATTGATTCCGACCAGTTTGAAAAGATTCTGAAATACATAAAATCTGGAGTTGAAAGTGGAGCCAATCTCGAAACTGGAGGAGAGAGGCATGGCTCAAAGGGTTATTATATCAAACCCACTGTTTTCTCGAATGTTCAGGATGATATGTTGATCGCAAAAGATGAGATCTTTGGTCCAGTTCAGTCAATTTTGAAGTTCAAAAAACTCGATGAGGTTATCAAGAGGGCAAACGCGAGTCGTTTTGGGCTGGCAGCCGGCGTGTTCACGAAGGATATTGATACGGCCAATACGTTAACCCGAGCTCTACGAGTAGGATCGCTTTTTGTGAATTGTTTCGATGTATTCGATGCTGCAATTCCATTTGGTGGGTATAAGATGAGTGGATTTGGAAGAGAAAAAGGAATTTACAGCCTCAGCAATTATCTTCAAGTCAAGGCTGTCATTACGCCCCTGAAGAATCCTGCTTGGCTTTAG 1623 47.01 MAARRLSKLFSRSFASPSSFMSRGPGTNPYVRRAIGKYSTAAAIEEPINPSINVNYTQLLINGQFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDIDRAVAAARRAFDEGPWPKMTAYYFQERSRIILRFADLMEKHNDEIAALETWDNGKPYEQSAKSEIPLLVRLFRYYGGWADKIHGLTVQADGPHHVQTLHEPIGVVGQIIPWNFPLLMYAWKVGPALACGNTIVLKTAEQTPLSALFVTKLLHEAGLPDGVINIVSGFGPTAGAALASHMDVDKIAFTGSTETGKIILGLSATSNLKPVTLELGGKSPFIVCEDADVDAAVELAHFALFFNQGQCCCAGSRTFVHESVYDEFLEKAKARAMKRTVGDPFKEGIEQGPQIDSDQFEKILKYIKSGVESGANLETGGERHGSKGYYIKPTVFSNVQDDMLIAKDEIFGPVQSILKFKKLDEVIKRANASRFGLAAGVFTKDIDTANTLTRALRVGSLFVNCFDVFDAAIPFGGYKMSGFGREKGIYSLSNYLQVKAVITPLKNPAWL 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 575450 578552 - Bma000222.2 Bma01g00054 74571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00054 540 CDD ALDH_F2BC 54 532 - -
Bma01g00054 540 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 24 540 - -
Bma01g00054 540 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Bma01g00054 540 SUPERFAMILY ALDH-like 53 534 IPR016161 GO:0016491
Bma01g00054 540 Pfam Aldehyde dehydrogenase family 65 530 IPR015590 GO:0016491
Bma01g00054 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 528 IPR016162 GO:0016491
Bma01g00054 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 310 499 IPR016163 GO:0016620
Bma01g00054 540 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 24 540 - -
Bma01g00054 540 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00054 Bma-Chr1:575450 Bma06g01043 Bma-Chr6:47255350 0 dispersed
Bma12g00574 Bma-Chr12:24926926 Bma01g00054 Bma-Chr1:575450 3.67E-96 dispersed
Bma01g00054 Bma-Chr1:575450 Bma07g00481 Bma-Chr7:5816668 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00054 K00128 - twl:119999292 875.159