Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00055 CAGAGAGAGGAAGAAGATAATGGCGTCTCTGCTTCGATTACATCTCTGGATAACAAAGAGATTGATTCTATTTCCTCTGTCATTCCTGGGTGGTTCTCCGAGATTAGCCCCATGTGGCCAGCAGGAGAGGCGCACTCCTTGAAGATAGACAATATTTTATTTCGAGGGAAGTCTAAGTACCAGAATGTCGTCGTCTTTCAGTCGTCAACTTATGGAAAGGTTCTGGTTTTGGATGGAGTGATTCAGCTCACCGAGAGAGATGAATGTGCTTACCAAGAAATGATCGCTCACTTACCGCTTTGCTCCATTCCAAACCCGAGAAAGGTTTTGGTCATTGGTGGAGGCGATGGTGGGGTTCTTCGAGAAGTTGCTCGCCATTCTACTGTCGAGAAAATAGATATATGTGAAATTGATGAGATGGTTGTTAATGTTTCAAAACAGTTTTTCCCGGATGTAGCAGTCGGATATGACGATCCTCGGGTCAAAATTCACATCGGCGATGGTAATATCAGCCCCTTCTCTCTTCATGAATCCCTCCCTCTTCTCGTTCCCGTCTTATGGACTCGTCTTTTCCTTCATGTCGCAGGAGTTGCATTTTTGAGGGCTGTCCCAGAAGGAACTTACGATGCGATTATAGTTGATTCTTCTGATCCGATCGGTCCTGCTCATGAGCTTTTTGAGAAGCCTTTTTTTGAGTCGGTAGCGAAGGCTTTACGTCCGGGAGGAGCCGTGTGCACTCAAGCCGAAAGTATATGGCTTCACATGCACATAATCAAGGAAATCGTGGCGAATTGCCGTCAAGTGTTCAAAGGGTCGGTCAATTATGCATGGACGTCAGTTCCTACATATCCGAGCGGCGTTATCGGTTTCATGCTCTGTTCGACTGAGGGGCCGGCTGTTGATTTCACGCACCCCGTTATTTCGATAGAGGGAGCCGATACTCAGAACAACCCGAGAGGGCCCTTGAAATTTTACAATTCTGAGATTCACAAGGCAGCTTTCTGTTTGCCATCTTTTGCCAGAAGGGTTATTGATTCAAAA 1041 46.3 QREEEDNGVSASITSLDNKEIDSISSVIPGWFSEISPMWPAGEAHSLKIDNILFRGKSKYQNVVVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPRKVLVIGGGDGGVLREVARHSTVEKIDICEIDEMVVNVSKQFFPDVAVGYDDPRVKIHIGDGNISPFSLHESLPLLVPVLWTRLFLHVAGVAFLRAVPEGTYDAIIVDSSDPIGPAHELFEKPFFESVAKALRPGGAVCTQAESIWLHMHIIKEIVANCRQVFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPAVDFTHPVISIEGADTQNNPRGPLKFYNSEIHKAAFCLPSFARRVIDSK 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 582452 585405 + Bma030166 Bma01g00055 74572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00055 347 Gene3D Spermidine synthase, tetramerisation domain 23 82 IPR037163 -
Bma01g00055 347 Gene3D Vaccinia Virus protein VP39 83 347 IPR029063 -
Bma01g00055 347 PIRSF Spermidine_synth 19 171 IPR030668 GO:0006595
Bma01g00055 347 PIRSF Spermidine_synth 185 347 IPR030668 GO:0006595
Bma01g00055 347 Hamap Polyamine aminopropyltransferase [speE]. 30 345 IPR001045 GO:0003824
Bma01g00055 347 Pfam Spermine/spermidine synthase domain 88 168 - -
Bma01g00055 347 Pfam Spermine/spermidine synthase domain 195 302 - -
Bma01g00055 347 PANTHER SPERMIDINE SYNTHASE-RELATED 3 169 - -
Bma01g00055 347 PANTHER SPERMIDINE SYNTHASE-RELATED 189 347 - -
Bma01g00055 347 Pfam Spermidine synthase tetramerisation domain 30 85 IPR035246 -
Bma01g00055 347 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 109 122 IPR030373 -
Bma01g00055 347 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 29 295 IPR030374 -
Bma01g00055 347 CDD AdoMet_MTases 108 247 - -
Bma01g00055 347 PANTHER SPERMIDINE/SPERMINE SYNTHASE 3 169 IPR001045 GO:0003824
Bma01g00055 347 PANTHER SPERMIDINE/SPERMINE SYNTHASE 189 347 IPR001045 GO:0003824
Bma01g00055 347 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 345 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00055 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - zju:107428628 517.694
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00055 Bma15g00191 CCT
Bma01g00055 Bma14g01785 CCT
Bma01g00055 Bma15g00191 ECH
Bma01g00055 Bma14g01785 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00055 Bma-Chr1:582452 Bma14g01767 Bma-Chr14:37981376 0 dispersed
Bma01g00055 Bma-Chr1:582452 Bma14g01785 Bma-Chr14:38429261 0 wgd
Bma01g00055 Bma-Chr1:582452 Bma15g00191 Bma-Chr15:1952578 2.69E-154 wgd
Bma01g00055 Bma-Chr1:582452 Bma08g00171 Bma-Chr8:2130172 2.16E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00055 Bma_Chr01 FPKM 7.804503 8.685005 50.384293 52.823532 2.195351 1.909887 1.834855 15.955926 15.707634 17.22002